PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn383611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 333aa    MW: 37293 Da    PI: 6.1919
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn383611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-072402722254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++e+L +++gL+ +q+  WF N+R +
  Achn383611 240 WPYPTEEDKERLVQETGLQLKQINKWFINQRKR 272
                 59*****************************87 PP
2ELK28.43.7e-10193214122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh L+++Y+++++++++E++
  Achn383611 193 ELKHDLKQGYKEKIVDIREEIL 214
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.9E-192771IPR005540KNOX1
PfamPF037902.9E-172970IPR005540KNOX1
SMARTSM012564.3E-2480136IPR005541KNOX2
PfamPF037916.1E-1789135IPR005541KNOX2
SMARTSM011888.6E-4193214IPR005539ELK domain
PROSITE profilePS512139.673193213IPR005539ELK domain
PfamPF037891.6E-6193214IPR005539ELK domain
PROSITE profilePS5007111.742213276IPR001356Homeobox domain
SuperFamilySSF466893.25E-15215278IPR009057Homeodomain-like
SMARTSM003892.9E-10215280IPR001356Homeobox domain
CDDcd000863.93E-12216275No hitNo description
Gene3DG3DSA:1.10.10.604.9E-24220277IPR009057Homeodomain-like
PfamPF059202.2E-17233272IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAAAAEKKAT SRRSEGDGGE EGDLQSAKCK ADILAHPLYE QLLSTHVQCL RIATPVDQLP  60
RIDAQLAQSQ NVMAKYSVLG HGNQPLDYKG LDQFMTHYVL LLSSFKEQLQ QHVRVHAMEA  120
VMACWELEQS LQSLTGVAPG EGTGATMSDD DEDNADSGTN LFDGSLDGPD TMGFGSLVPT  180
ENERSLMERV RHELKHDLKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSLL KAWWQSHSKW  240
PYPTEEDKER LVQETGLQLK QINKWFINQR KRNWHSSSST TTKSKRKRMA SYYYSTTPFE  300
AEEVVTSTRI GGNGLFVEVV DVAAFLIMFP DG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269287RKRNWHSSSSTTTKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106650.11e-173homeobox protein knotted-1-like LET12
SwissprotO223001e-158LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A2R6QS300.0A0A2R6QS30_ACTCH; Homeobox protein like
STRINGVIT_11s0118g00800.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-152KNOTTED1-like homeobox gene 3