PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn382471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 262aa    MW: 30416.9 Da    PI: 5.2742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn382471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+teEd++l  +v+++G  +W+  +++ g+ R++k+c++rw +yl
       Achn382471 14 KGLWSTEEDDKLRAYVQRYGHWNWRELPKYAGLSRCGKSCRLRWMNYL 61
                     678*****************99************************97 PP
2Myb_DNA-binding56.56.3e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+eE++l++++++qlG++ W++Ia++++ gRt++++k++w+++
       Achn382471  67 RGGYTEEEEDLILKLHQQLGNK-WSAIAAKLP-GRTDNEIKNYWHTH 111
                      6778******************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.369961IPR017930Myb domain
SuperFamilySSF466892.33E-3011108IPR009057Homeodomain-like
SMARTSM007176.4E-121363IPR001005SANT/Myb domain
PfamPF002495.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221568IPR009057Homeodomain-like
CDDcd001678.70E-91761No hitNo description
PROSITE profilePS5129424.66662116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2769116IPR009057Homeodomain-like
CDDcd001672.10E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRTPSFDKN GRKKGLWSTE EDDKLRAYVQ RYGHWNWREL PKYAGLSRCG KSCRLRWMNY  60
LRPNVKRGGY TEEEEDLILK LHQQLGNKWS AIAAKLPGRT DNEIKNYWHT HIKKRLMKEN  120
QEAMFEPKEQ EIEASQFETN LKQRSNQITE FPHKNRAILE SAPLSPELSS SEFSSSLTSD  180
YAVLSDTELV VEDGNSTNSS ELLTEAIGNF WTEPFLEDKS FNKNEFSSSN MVEGGFFYPD  240
SLYFDDGMDL FYQVLQDFPK M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066339.12e-95transcription factor MYB14-like
TrEMBLA0A2R6QCA91e-158A0A2R6QCA9_ACTCH; Myb-related protein like
STRINGPOPTR_0019s14130.11e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-58myb domain protein 9