PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn382371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 338aa    MW: 38325.4 Da    PI: 4.5434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn382371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS227.37.4e-701833082373
        GRAS  82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                 +l  ++++ P+++f++ + N+aI +a+eg+++ Hi+Df+i++++QWp+L++ L++R ++pp lRi + +s  ++    + ++ee+g rL++fA++ +v 
  Achn382371  18 ELagYVDLIPWHRFGFCVSNSAIFKAIEGCQKFHILDFSITHCMQWPTLIDDLSKRLQKPPFLRISVPSSRPNVppfLNMSIEEVGARLENFAKSRDVC 116
                 4455999***********************************************************99997777999999******************* PP

        GRAS 176 fefnvl...............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFler 256
                 fe nv+               + + l++l++++L+++ +Eal++n++  l +llde+  +++   + +++L ++ sl+P++++vv++++d++s+s+  r
  Achn382371 117 FELNVIdqdsslssnenpsfhYDSLLSNLNPSMLNLRDDEALVINCQNWLRYLLDEERGSANddsQCNDFLGTIGSLNPRMIIVVDEDSDLGSSSLTSR 215
                 *************999999855558999**************************99766655466999******************************* PP

        GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                 ++  ++y +  fd+le+ lp++s +ri +E+  +g +i+n++  eg +r+er e  +k ++r+++ GF  vp++e++  ++k ll +++  g+ +++e+
  Achn382371 216 ITTFFNYLWIPFDALETFLPKDSAQRIEYEAD-IGHKIENIIGFEGIQRIERLECGMKLSQRMRNGGFLGVPFDEETGVEVKVLLDEHA-SGWGMKKED 312
                 ********************************.********************************************************.8999***** PP

        GRAS 356 gslvlgWkdrpLvsvSaW 373
                 + lvl+Wk+++ v ++aW
  Achn382371 313 DMLVLTWKGHNSVYATAW 330
                 ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.8371312IPR005202Transcription factor GRAS
PfamPF035142.5E-6718330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNFNVSSAFH RRPMSVTELA GYVDLIPWHR FGFCVSNSAI FKAIEGCQKF HILDFSITHC  60
MQWPTLIDDL SKRLQKPPFL RISVPSSRPN VPPFLNMSIE EVGARLENFA KSRDVCFELN  120
VIDQDSSLSS NENPSFHYDS LLSNLNPSML NLRDDEALVI NCQNWLRYLL DEERGSANDD  180
SQCNDFLGTI GSLNPRMIIV VDEDSDLGSS SLTSRITTFF NYLWIPFDAL ETFLPKDSAQ  240
RIEYEADIGH KIENIIGFEG IQRIERLECG MKLSQRMRNG GFLGVPFDEE TGVEVKVLLD  300
EHASGWGMKK EDDMLVLTWK GHNSVYATAW VPCGYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3722332172474Protein SHORT-ROOT
5b3h_B4e-3822332118420Protein SHORT-ROOT
5b3h_E4e-3822332118420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055755.10.0scarecrow-like protein 32
TrEMBLA0A2R6QW910.0A0A2R6QW91_ACTCH; Scarecrow-like protein
STRINGcassava4.1_029854m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-96GRAS family protein