PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn380841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 454aa    MW: 51037.1 Da    PI: 6.7502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn380841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-18136182148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia +m  gR +kqc++rw+++l
       Achn380841 136 KGQWTDEEDRKLLKLVKQYGVRKWAQIADKMV-GRAGKQCRERWHNHL 182
                      799*****************************.*************97 PP
2Myb_DNA-binding56.37.1e-18188230145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
       Achn380841 188 KDTWSEEEEKMLVEAHEKVGNK-WAEIAKQIP-GRTENSIKNHWN 230
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.547131186IPR017930Myb domain
SuperFamilySSF466897.7E-31134229IPR009057Homeodomain-like
SMARTSM007172.4E-17135184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-27137190IPR009057Homeodomain-like
PfamPF139217.2E-21139199No hitNo description
CDDcd001671.01E-15139182No hitNo description
SMARTSM007175.7E-17187235IPR001005SANT/Myb domain
PROSITE profilePS5129420.659187237IPR017930Myb domain
CDDcd001673.60E-13190233No hitNo description
Gene3DG3DSA:1.10.10.603.4E-21191235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDTKAKSPYQ EKKKFQCIAR VLLLIIIKAD EEAIDKFLSE NDHFSLQNSQ NKEALVFASG  60
YSGLSPSDGA IGGFLWPDSL PDTSLVERFF HERESLNWAS ERNSNFGLDG ENRLEVGNSK  120
GVEKRAKGGS SMALIKGQWT DEEDRKLLKL VKQYGVRKWA QIADKMVGRA GKQCRERWHN  180
HLRPDIKKDT WSEEEEKMLV EAHEKVGNKW AEIAKQIPGR TENSIKNHWN ATKRRQNSKR  240
KIKKSEGQNR KSQSSILQDY IKSKDLSITS THISSTQSTK ITITPPTPTN SAVTDDFSNP  300
TFPIPLADLS ESSIDDSPQF MNQAYEDELN FMINFFSDKN HNNDMEGKKV QNDHAKDVLD  360
MNPMGFNNSN GGNLVNKTIN TPQDEPPRTH LSSDLFLAHL LDGPTNTSST SMDCFYDYMK  420
ADSLPTQASS SGTKDMDLME MVASSQLSLG GKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-431342362104C-Myb DNA-Binding Domain
1msf_C4e-431342362104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873311.11e-120transcription factor MYB119-like
TrEMBLA0A2R6PQ021e-138A0A2R6PQ02_ACTCH; Transcription factor like
STRINGcassava4.1_033771m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-73myb domain protein 119