PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn380251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 593aa    MW: 66064.2 Da    PI: 8.7752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn380251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-1857100448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      WT+eEd ll + vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l
       Achn380251  57 WTEEEDNLLSKIVKKYNGRNWKKIAACIP-GRTDVQCLHRWQKVL 100
                      *****************************.************986 PP

2Myb_DNA-binding58.81.2e-18106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
       Achn380251 106 KGPWTKEEDDRIIELVEKYGCKKWSCIAKFLP-GRIGKQCRERWHNHL 152
                      79******************************.*************97 PP

3Myb_DNA-binding42.71.3e-13158203145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      + +WT+eE+  l ++++ +G++ W+ Ia+ ++   +Rt++ +k++w+
       Achn380251 158 KEAWTKEEESVLTHYHRIYGNK-WAEIAKFLPgsIHRTDNAIKNHWN 203
                      579*******************.***********99**********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.81447100IPR017930Myb domain
SMARTSM007175.5E-1553102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2256112IPR009057Homeodomain-like
SuperFamilySSF466895.11E-1656110IPR009057Homeodomain-like
CDDcd001679.36E-1557100No hitNo description
PfamPF002493.1E-1657100IPR001005SANT/Myb domain
PROSITE profilePS5129431.016101156IPR017930Myb domain
SuperFamilySSF466892.34E-29103202IPR009057Homeodomain-like
SMARTSM007179.7E-16105154IPR001005SANT/Myb domain
PfamPF002491.1E-17106152IPR001005SANT/Myb domain
CDDcd001671.84E-15108152No hitNo description
Gene3DG3DSA:1.10.10.604.0E-27113159IPR009057Homeodomain-like
SMARTSM007171.3E-14157208IPR001005SANT/Myb domain
PROSITE profilePS5129418.021157210IPR017930Myb domain
PfamPF002496.0E-12158203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-19160210IPR009057Homeodomain-like
CDDcd001673.07E-10160203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MIEVKREEEC VVGITKEISF ASYSPVSDSS SDTCNPKSPS SQGRTTGPTR RSSQAGWTEE  60
EDNLLSKIVK KYNGRNWKKI AACIPGRTDV QCLHRWQKVL NPELVKGPWT KEEDDRIIEL  120
VEKYGCKKWS CIAKFLPGRI GKQCRERWHN HLDPAIKKEA WTKEEESVLT HYHRIYGNKW  180
AEIAKFLPGS IHRTDNAIKN HWNCSVKKKL DLNLPSTSML DMQGPSSPDF YGSETKPPSV  240
EAKVARYDLR EASFDIRSGK VHAIETCSTE LVLGNAYSRG TCLESKLSIR GTRRSSEAGV  300
DKLISPLRRI QFRGTDAMTC GLTSEPYRGN CYPDRHGHLK ASSSDDSFNA SGLVISSFNP  360
LDVLPITSIK AFESPKRHRN CGLGGMKLES GSSSDNSFLS LSTGGFSEDS GQVCKKNRVH  420
QTPNPDDKNY GFLCYKPPQL KDFLIPKEND EGCPNADNDL KHGKSQLCCS PPPNLALSMS  480
ISSISPESML RNSARSYKNT PSIIRKRTSR DSGSSNNYPD RNKTSEHMIS RTSEAESMNI  540
RSETSNVDRS VERRLQGEFD NEWDTTAVRC RTPVSAATSP SLNFGANVML TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-67572109159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-67572109159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118929.10.0transcription factor MYB3R-4-like isoform X2
TrEMBLA0A2R6Q8C10.0A0A2R6Q8C1_ACTCH; Myb-related protein like
STRINGXP_009606734.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-83myb domain protein 3r-5