PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn380251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 593aa MW: 66064.2 Da PI: 8.7752 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 57 | 100 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll + vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l Achn380251 57 WTEEEDNLLSKIVKKYNGRNWKKIAACIP-GRTDVQCLHRWQKVL 100 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l Achn380251 106 KGPWTKEEDDRIIELVEKYGCKKWSCIAKFLP-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 42.7 | 1.3e-13 | 158 | 203 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 + +WT+eE+ l ++++ +G++ W+ Ia+ ++ +Rt++ +k++w+ Achn380251 158 KEAWTKEEESVLTHYHRIYGNK-WAEIAKFLPgsIHRTDNAIKNHWN 203 579*******************.***********99**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.814 | 47 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 56 | 112 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.11E-16 | 56 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.36E-15 | 57 | 100 | No hit | No description |
Pfam | PF00249 | 3.1E-16 | 57 | 100 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 31.016 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-29 | 103 | 202 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-16 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-15 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-27 | 113 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 157 | 208 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.021 | 157 | 210 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.0E-12 | 158 | 203 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 160 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-10 | 160 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MIEVKREEEC VVGITKEISF ASYSPVSDSS SDTCNPKSPS SQGRTTGPTR RSSQAGWTEE 60 EDNLLSKIVK KYNGRNWKKI AACIPGRTDV QCLHRWQKVL NPELVKGPWT KEEDDRIIEL 120 VEKYGCKKWS CIAKFLPGRI GKQCRERWHN HLDPAIKKEA WTKEEESVLT HYHRIYGNKW 180 AEIAKFLPGS IHRTDNAIKN HWNCSVKKKL DLNLPSTSML DMQGPSSPDF YGSETKPPSV 240 EAKVARYDLR EASFDIRSGK VHAIETCSTE LVLGNAYSRG TCLESKLSIR GTRRSSEAGV 300 DKLISPLRRI QFRGTDAMTC GLTSEPYRGN CYPDRHGHLK ASSSDDSFNA SGLVISSFNP 360 LDVLPITSIK AFESPKRHRN CGLGGMKLES GSSSDNSFLS LSTGGFSEDS GQVCKKNRVH 420 QTPNPDDKNY GFLCYKPPQL KDFLIPKEND EGCPNADNDL KHGKSQLCCS PPPNLALSMS 480 ISSISPESML RNSARSYKNT PSIIRKRTSR DSGSSNNYPD RNKTSEHMIS RTSEAESMNI 540 RSETSNVDRS VERRLQGEFD NEWDTTAVRC RTPVSAATSP SLNFGANVML TP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-67 | 57 | 210 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-67 | 57 | 210 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028118929.1 | 0.0 | transcription factor MYB3R-4-like isoform X2 | ||||
TrEMBL | A0A2R6Q8C1 | 0.0 | A0A2R6Q8C1_ACTCH; Myb-related protein like | ||||
STRING | XP_009606734.1 | 1e-163 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10393 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 4e-83 | myb domain protein 3r-5 |