PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn379721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRF

Protein Properties

Length: 442aa MW: 46884.1 Da PI: 9.6007

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn379721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	33.8	5.9e-11	265	295	6	37
WRC 6 rCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 rCr tDGKk Csr+v++++k+C H+h++ + Achn379721 265 RCR-TDGKKYWCSREVVPNHKYCAWHMHKSGK 295 898.************************9855 PP
2	WRC	43.9	4.3e-14	328	359	6	37
WRC 6 rCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 rCrRtDG+kWRC ++v+++ +C Hlhrg + Achn379721 328 RCRRTDGRKWRCGKEVVPNRDYCTQHLHRGAK 359 9****************************976 PP
3	QLQ	45.8	1.9e-16	44	79	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT+aQl +L +Q l++Ky++a++PvP +L+ +i+k Achn379721 44 TFTPAQLLELQQQSLILKYIVAGLPVPFHLIPPIWK 79 6*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.1E-6	43	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.45	44	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.6E-11	45	78	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	13.072	259	303	IPR014977	WRC domain
Pfam	PF08879	1.8E-7	265	296	IPR014977	WRC domain
PROSITE profile	PS51667	15.911	323	367	IPR014977	WRC domain
Pfam	PF08879	6.4E-13	328	360	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDKMILLTKL TSSVRSVLFG EGEALSINLS LGIGAGYGGL RRATFTPAQL LELQQQSLIL 60 KYIVAGLPVP FHLIPPIWKS VARAFGPVSG GIYNQYPSFT SASGGALNSS NATTKTNSIS 120 TYTKCNLRSS IPSNLQLATP SSNTLSNTPA TTPPTTTNCI GGINGGDNNV VTKNDNIATT 180 YSSNTTTATT ITTTTTGLAS AAAENNSHSR SNRDQIAGKI NIRGSSNNVN DCKVGSFVDP 240 GFGVPTRTVL RAVCYSNVVE TKLPRCRTDG KKYWCSREVV PNHKYCAWHM HKSGKKLTEA 300 SQSVMVAAPP PPPPSSVIFS PPLAILHRCR RTDGRKWRCG KEVVPNRDYC TQHLHRGAKK 360 LAVAASQSVT VAAAPPSSIF LSTPPLAIPK KLDTPMYMDT NLSISIATSP QELSNNEEAS 420 CSNSSSDATT VTDENVSVSC D*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDKMILLTKL TSSVRSVLFG EGEALSINLS LGIGAGYGGL RRATFTPAQL LELQQQSLIL  60
KYIVAGLPVP FHLIPPIWKS VARAFGPVSG GIYNQYPSFT SASGGALNSS NATTKTNSIS  120
TYTKCNLRSS IPSNLQLATP SSNTLSNTPA TTPPTTTNCI GGINGGDNNV VTKNDNIATT  180
YSSNTTTATT ITTTTTGLAS AAAENNSHSR SNRDQIAGKI NIRGSSNNVN DCKVGSFVDP  240
GFGVPTRTVL RAVCYSNVVE TKLPRCRTDG KKYWCSREVV PNHKYCAWHM HKSGKKLTEA  300
SQSVMVAAPP PPPPSSVIFS PPLAILHRCR RTDGRKWRCG KEVVPNRDYC TQHLHRGAKK  360
LAVAASQSVT VAAAPPSSIF LSTPPLAIPK KLDTPMYMDT NLSISIATSP QELSNNEEAS  420
CSNSSSDATT VTDENVSVSC D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083687.1	4e-36	growth-regulating factor 9-like isoform X2
TrEMBL	A0A2R6R9G6	0.0	A0A2R6R9G6_ACTCH; Growth-regulating factor like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7798	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	3e-11	growth-regulating factor 7