PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn378821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 219aa MW: 24909.5 Da PI: 9.0546

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn378821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	57	76	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Achn378821 57 FSCPVCSKTFNRYNNLQMHM 76 89*****************9 PP
2	zf-C2H2	18.3	6.1e-06	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+F k + ++H +++ Achn378821 141 FTCKKCGKPFAVKGDWRTHEKNC 163 89*****************9987 PP
3	zf-C2H2	10.9	0.0015	170	187	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 +Cg F++k +Lk Hir Achn378821 170 ICGSDFKHKRSLKDHIRA 187 8***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.75E-8	57	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-6	57	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.031	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.762	57	84	IPR007087	Zinc finger, C2H2
Pfam	PF13894	5.6E-4	57	79	No hit	No description
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.75E-8	136	161	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-5	139	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	44	141	161	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	140	167	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MYQNDVNGGN FHGLLEDQVK EKESHVDVVL GYPLNSLSKG QYWIPTPSQI LSGPTQFSCP 60 VCSKTFNRYN NLQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCAPGC KHHIDHPRSR 120 PLKDFRTIQT HFKRKHGLKP FTCKKCGKPF AVKGDWRTHE KNCGKVWYCI CGSDFKHKRS 180 LKDHIRAFGH GHGVLWIRCF GEEEEPASEV EHGGEASM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028123185.1	1e-120	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2R6QKS1	1e-150	A0A2R6QKS1_ACTCH; Zinc finger protein
STRING	GLYMA12G36660.2	1e-118	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]