PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn378631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29160.6 Da PI: 4.8303 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 67 | 95 | 20 | 46 |
TTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 Ggg...tWktIartmgkgRtlkqcksrwqk 46 Gg+ +W+ Ia++++ gRt++++k++w++ Achn378631 67 GGHntlRWSQIAARLP-GRTDNEIKNFWNS 95 5556779*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.1E-8 | 58 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.423 | 68 | 97 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.4E-6 | 69 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-6 | 69 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 72 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAGFEMAGEP KIDEVKVEEL LGGEKDQSID LKGKKIGSLD SPFSHEKPKW TSTFSHTTIC 60 TGTLTFGGHN TLRWSQIAAR LPGRTDNEIK NFWNSTVKKR LKNISTDLSS KPRDHASGRL 120 IMSMQDHHNA MHGMVTANCF NPNFPLLDNN YDLMPYLQQV GIEDYGIVEG GVMGLERDFS 180 IPQLESRGVV ENNNAGGDYN FDEKIVNDKG FNISEGIKLE DVFGFGNHWQ GENLKMGDNW 240 DLEGLLENVS SFPYLDFHVE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028091328.1 | 9e-58 | transcription factor MYB83-like | ||||
TrEMBL | A0A2R6QKT8 | 1e-134 | A0A2R6QKT8_ACTCH; Transcription factor like | ||||
STRING | POPTR_0001s27430.1 | 6e-48 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 4e-24 | myb domain protein 83 |