PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn377531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 397aa MW: 44019.4 Da PI: 4.2146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Achn377531 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.23E-32 | 45 | 102 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-19 | 46 | 103 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 46 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-14 | 46 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-36 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MARKRKAGEG AAAEDNPNEE NLAWDEMVKE AAAAAALGGP RRARKRFVGV RQRPSGRWVA 60 EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSPSSN STPALPSKIT 120 NLLLHRLKAR NNSLAASSTS SFVPINQQQM QQEEYIDEVS DFSDTQFTDF LNDSEDYATT 180 YNNMIIDNNA SFGESMARSF ESCLIEQESS GVREQDFDYN CSDLGQSSSG DANLGGEIEE 240 EGEEEGTDLG VVDFQFLDEI GSCYYSPFEI AEEISEPMEQ DFCGDEPSML TEAMKRMKYE 300 RKYSASLYAF NGIPECLRLK LGSGSTVKQI ERSDLLTHPR NACNEDKEEK KIESNALGSK 360 EEKNEQSSSD MGFSTSNEGE SSLWGSLNLP PICYIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 46 | 102 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028096612.1 | 1e-176 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A2R6P9K6 | 0.0 | A0A2R6P9K6_ACTCH; Ethylene-responsive transcription factor RAP2-11 like | ||||
STRING | cassava4.1_008867m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-22 | related to AP2 11 |