PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn376501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 205aa MW: 23495.6 Da PI: 9.8798 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69 | 6.6e-22 | 65 | 164 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f kv + + k+ rl +pk+ a++h +++ +s l +ed +g++W++k++++k+s++y+lt+ W++Fvk++++ +gD+v F +++ +++l+ Achn376501 65 FNKVV-TRSDIKQYRLAIPKHQAKKHfpphvvSSS-SNSPFLCMEDNEGKVWRFKYSFWKSSQGYMLTNEWNQFVKEKRVSVGDMVSFFRSNGADKRLF 161 55555.555566668**************997333.3445799*********************************************97766777777 PP EEE CS B3 94 vkv 96 + + Achn376501 162 IDW 164 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.0E-30 | 61 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-25 | 63 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.49E-21 | 63 | 155 | No hit | No description |
PROSITE profile | PS50863 | 11.011 | 64 | 167 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-15 | 65 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-19 | 66 | 165 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MQVNDLDPLA VSGVGPHGVT ARENMQKYRH YQEPENSNRC HYCKELCNDT KKESLISLPG 60 REKLFNKVVT RSDIKQYRLA IPKHQAKKHF PPHVVSSSSN SPFLCMEDNE GKVWRFKYSF 120 WKSSQGYMLT NEWNQFVKEK RVSVGDMVSF FRSNGADKRL FIDWKPQNPS GIVAKSEPLE 180 STQNGQTVML FGVNISTNRP NNHN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-33 | 62 | 174 | 11 | 124 | DNA-binding protein RAV1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060144.1 | 4e-79 | B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A166G4C5 | 3e-41 | A0A166G4C5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21688 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 6e-34 | related to ABI3/VP1 1 |