PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn376491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 327aa MW: 36516.6 Da PI: 6.38 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.4 | 4.2e-41 | 107 | 260 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssas 83 kkdrhski T++g+RdRR+Rls+e+a +fF Lqd+LGfdk+skt+ WLl+++k+aik+l + s+ss s+c +es + Achn376491 107 SKKDRHSKIETAQGPRDRRMRLSLEVAPQFFGLQDMLGFDKASKTVGWLLNKSKTAIKDLKKGiphmkpspsvganSASSTSDCeglsgIDESTV---- 201 69*************************************************************99988888887665555567755443111111.... PP TCP 84 nsssg..........kaaksaakskksqksaasa.lnlakesrakarararertrekmriknk 135 + +++s ++ k++k +++ + kesr+kar+rarert ek r++++ Achn376491 202 ----EgdggqartskGKKPSPLSGAKEKKGTKALrKSATKESREKARERARERTLEKRRLNDQ 260 ....122233445543444444444444444433044555*****************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-43 | 107 | 256 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.132 | 108 | 166 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.347 | 237 | 254 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MYPSSNNDNT PITYPSLDQT ICFKSSLYDD FTSNSTQDQD PQSSSLYCFL SPNFPYEDDI 60 VLRQHLNNLL LQQQPPPPPP LPEATENMDD STKNQCPSSV EPRKRSSKKD RHSKIETAQG 120 PRDRRMRLSL EVAPQFFGLQ DMLGFDKASK TVGWLLNKSK TAIKDLKKGI PHMKPSPSVG 180 ANSASSTSDC EGLSGIDEST VEGDGGQART SKGKKPSPLS GAKEKKGTKA LRKSATKESR 240 EKARERARER TLEKRRLNDQ SKPTFEEMSS HDMNQLASNW SPFENVDESP SNFQVEELDS 300 SIFNYDQHNT GISQEMTLEE LKPICF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060129.1 | 2e-72 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A2R6PRR5 | 0.0 | A0A2R6PRR5_ACTCH; Transcription factor CYCLOIDEA like | ||||
STRING | POPTR_0015s03140.1 | 2e-58 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-22 | TCP domain protein 12 |