PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn375941

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 1015aa MW: 111121 Da PI: 5.081

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn375941	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.8	2.1e-28	612	663	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++ l++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Achn375941 612 AEKHVGLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 663 58999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.347	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-25	616	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	906	998	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-24	911	993	No hit	No description
PROSITE profile	PS51745	20.199	914	996	IPR000270	PB1 domain
SMART	SM00666	8.1E-24	914	996	IPR000270	PB1 domain
Pfam	PF00564	2.0E-18	915	994	IPR000270	PB1 domain
CDD	cd06407	3.51E-30	915	995	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MFSGGALTFT IALVRRNFFL LLKMEYPFSS KEKGGYWASP RGQMEGGDSS EDPFNNVVEL 60 MNFDMYSGWC SSPTTADPMF AAYAFSPLQS MPLTSYVPFD ALNFNEQDNA LFPEPDGDVG 120 GSSCGGGDNM VFQHMNTQFG FPMDSSGWDD PGTRKGTGSF QQNVTGNSLV PRPLAQTLAE 180 KMLRVLSLFK ESSGGGILAQ VWVPIKNGDR YILSTCEQPY LLDQMLAGYR EVSREYTFSA 240 EEKQGSFPGL PGRVFISKLP EWTSNVVYYN EAEYLRVQHA VHHEVRGSVA LPIFEDDPLE 300 ISCCAVLELV TMKEQPNFDV EMENVCRALQ AVNLRSTAPP KLYAQYLSKN QRAALAEITD 360 VLRAVCHAHR LPLALTWIPC CYNEGVGNDI SRLCVKGGNA SLSEKCILCI EDTACYVNDR 420 EMQEFVHACA EHYLKEGQGI SGKALQSNHP FFFPDVKSYA ISDYPLVQHA RKFGLTAAVA 480 IRLRSTFTGD DDYILEFFLP VNMKGSTEQQ LLLNNLSGTM QRISKSLRTV SDAELVGTKG 540 SNVEFQKGSL PNFAPVAISG INSQQTLDSS LNYIDQMPPD AFDPRTVLSE PDGPREQMSG 600 SRRLMEKKRS TAEKHVGLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GILRWPSRKI 660 NKVNRSLRKI QTVLDSVQGV EGGLKFDPTT GGLVAAGSII QEFDTGGTIL FPNKNASLKK 720 PESVSQDAPS VCPISCTDTE NSTVKLEEET YMDGNQAGLP RSLFMPNTYK GGNDSKIALT 780 DCCDDSKSAA LDAGKLGPVS LDTGAWTCSE DASLSSFFGK QGCKSLNKSS LKLENSDSHF 840 FSRSSDETDT GMDGDMGMRA DDGVIEHNQP PSSGMTDSSN GAGSAMHDSS SSSPSFGERR 900 HSKTQMSSGD SGSKISVKAT YKEDTVRFKF EPSLGCNQLY EEVAKRFKLH TGTFQLKYLD 960 DEQEWVMLVS DSELQECLEI LDFVGTRSVK FLIRDLPCAT GSSGSSNCFL AAST*

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MFSGGALTFT IALVRRNFFL LLKMEYPFSS KEKGGYWASP RGQMEGGDSS EDPFNNVVEL  60
MNFDMYSGWC SSPTTADPMF AAYAFSPLQS MPLTSYVPFD ALNFNEQDNA LFPEPDGDVG  120
GSSCGGGDNM VFQHMNTQFG FPMDSSGWDD PGTRKGTGSF QQNVTGNSLV PRPLAQTLAE  180
KMLRVLSLFK ESSGGGILAQ VWVPIKNGDR YILSTCEQPY LLDQMLAGYR EVSREYTFSA  240
EEKQGSFPGL PGRVFISKLP EWTSNVVYYN EAEYLRVQHA VHHEVRGSVA LPIFEDDPLE  300
ISCCAVLELV TMKEQPNFDV EMENVCRALQ AVNLRSTAPP KLYAQYLSKN QRAALAEITD  360
VLRAVCHAHR LPLALTWIPC CYNEGVGNDI SRLCVKGGNA SLSEKCILCI EDTACYVNDR  420
EMQEFVHACA EHYLKEGQGI SGKALQSNHP FFFPDVKSYA ISDYPLVQHA RKFGLTAAVA  480
IRLRSTFTGD DDYILEFFLP VNMKGSTEQQ LLLNNLSGTM QRISKSLRTV SDAELVGTKG  540
SNVEFQKGSL PNFAPVAISG INSQQTLDSS LNYIDQMPPD AFDPRTVLSE PDGPREQMSG  600
SRRLMEKKRS TAEKHVGLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GILRWPSRKI  660
NKVNRSLRKI QTVLDSVQGV EGGLKFDPTT GGLVAAGSII QEFDTGGTIL FPNKNASLKK  720
PESVSQDAPS VCPISCTDTE NSTVKLEEET YMDGNQAGLP RSLFMPNTYK GGNDSKIALT  780
DCCDDSKSAA LDAGKLGPVS LDTGAWTCSE DASLSSFFGK QGCKSLNKSS LKLENSDSHF  840
FSRSSDETDT GMDGDMGMRA DDGVIEHNQP PSSGMTDSSN GAGSAMHDSS SSSPSFGERR  900
HSKTQMSSGD SGSKISVKAT YKEDTVRFKF EPSLGCNQLY EEVAKRFKLH TGTFQLKYLD  960
DEQEWVMLVS DSELQECLEI LDFVGTRSVK FLIRDLPCAT GSSGSSNCFL AAST*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2R6RY48	0.0	A0A2R6RY48_ACTCH; Uncharacterized protein
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]