PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn375641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 434aa    MW: 48322.5 Da    PI: 8.4828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn375641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16116163148
                      TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Edel+++++ k++G++ W+ Ia+ ++ gR +kqc++rw+++l
       Achn375641 116 KGPWTKTEDELIIELFsKKHGNHKWSEIAKSLP-GRIGKQCRERWYNHL 163
                      79*************95689999**********.*************97 PP
2Myb_DNA-binding49.21.2e-15169211145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+ E++ l +a++ +G++ W++Ia+ +  gRt++++k++w+
       Achn375641 169 RTPWTEKEELELFRAHEIYGNR-WAKIAKFLH-GRTENSIKNHWN 211
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177640112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1290123IPR009057Homeodomain-like
PROSITE profilePS500904.28691110IPR017877Myb-like domain
SuperFamilySSF466893.71E-1992155IPR009057Homeodomain-like
PROSITE profilePS5129427.069111167IPR017930Myb domain
SMARTSM007177.2E-14115165IPR001005SANT/Myb domain
PfamPF002491.9E-15116163IPR001005SANT/Myb domain
CDDcd001679.60E-15118163No hitNo description
Gene3DG3DSA:1.10.10.603.1E-23124171IPR009057Homeodomain-like
SuperFamilySSF466891.31E-27142224IPR009057Homeodomain-like
PROSITE profilePS5129419.321168218IPR017930Myb domain
SMARTSM007175.6E-16168216IPR001005SANT/Myb domain
PfamPF002492.5E-14169211IPR001005SANT/Myb domain
CDDcd001675.45E-13171211No hitNo description
Gene3DG3DSA:1.10.10.603.9E-20172217IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKEVKESDAE TEKTGAASSD GSNDNSDHED RKPVSFQGFV FSVFNFSSIC LAAEKIKEKK  60
KILKVYAMAN CLCSLCGRIK ESIKETFVSQ SECVPNRTDV QCLHRWQKVL NPDLVKGPWT  120
KTEDELIIEL FSKKHGNHKW SEIAKSLPGR IGKQCRERWY NHLNPEINRT PWTEKEELEL  180
FRAHEIYGNR WAKIAKFLHG RTENSIKNHW NCSMKKKKNL YSTSVTISSD PPKPPACLSS  240
SSNFTFDLTV PRDIHNKKFS VNCVGSGDSN PLKLGYESLH GDNSPIFVKT GQFPSTDSFI  300
GLPLAPVSLD TLNTHTSLDC SSLESVLRSK AMSFKNMPSI IRKRDLRKFS QGSPGSFDGC  360
TSEENSNSLT NAEKVLLSSG KSRKLESSVT INSVEKRLEF AFDNVCDKRN VSAESDASGV  420
GHDSDISVTF SGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-559421736158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-559421736158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028095820.12e-83transcription factor MYB3R-2-like
TrEMBLA0A2R6QS770.0A0A2R6QS77_ACTCH; Myb-related protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1748824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-60Homeodomain-like protein