PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn375621
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 745aa    MW: 81458.7 Da    PI: 6.2155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn375621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86e-2151106156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Achn375621  51 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 106
                 688999***********************************************999 PP
2START202.61.6e-632474711206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+a+ +ep+W++s     e++n de+l++f++  +     + +ea+r++gvv+ ++  lve+l+d++ +W e ++    + +t++ is
  Achn375621 247 ELALAAMEELVKMAQTNEPLWFRSFeggrEILNHDEYLRTFTPCIGlkpngFVTEASRETGVVIINSLALVETLMDSN-RWAEIFPcmiaRTTTTDEIS 344
                 5899**************************************99999***9***************************.**********9********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +    +  +++lpSg+++++++ng+skvtwveh++++++++h
  Achn375621 345 TGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDGIRETSGATTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESIVH 443
                 ********************************************************999**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r+l++ g+ +ga++wvatlqrqce+
  Achn375621 444 QIYRPLIGAGMGFGAQRWVATLQRQCEC 471
                 **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2134108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2238108IPR009057Homeodomain-like
PROSITE profilePS5007117.24848108IPR001356Homeobox domain
SMARTSM003892.2E-1749112IPR001356Homeobox domain
CDDcd000862.10E-1850108No hitNo description
PfamPF000461.7E-1851106IPR001356Homeobox domain
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PROSITE profilePS5084844.794238474IPR002913START domain
SuperFamilySSF559612.4E-33238471No hitNo description
CDDcd088756.84E-126242470No hitNo description
SMARTSM002342.4E-49247471IPR002913START domain
PfamPF018523.6E-55247471IPR002913START domain
SuperFamilySSF559611.7E-24499669No hitNo description
SuperFamilySSF559611.7E-24697737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MEGQGEATRI AENYEGNVGR RSREEHESRS GSDDGGGSGD DQDGDDKPPR KKRYHRHTPQ  60
QIQELESLFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN RRTQMKTQLE RHENSILRQE  120
NDKLRAENMS IREAMRNPIC TNCGGPAIIG DISLEEQQLR IENARLKDEL DRVCALAGKF  180
LGRPIPTMPN SSLELGVGSN GFGSMNAVAT TLPNLGPDFG VGISSGFPVV VAPSRATTGM  240
ERSMYLELAL AAMEELVKMA QTNEPLWFRS FEGGREILNH DEYLRTFTPC IGLKPNGFVT  300
EASRETGVVI INSLALVETL MDSNRWAEIF PCMIARTTTT DEISTGMGGT RNGALQLMHA  360
ELQVLSPLVP VREVNFLRFC KQHAEGVWAV VDVSIDGIRE TSGATTFLNC RRLPSGCVVQ  420
DMPNGYSKVT WVEHAEYDES IVHQIYRPLI GAGMGFGAQR WVATLQRQCE CLAILMSSTV  480
PSRDHTAITA SGRRSMLKLA QRMTDNFCAG VCASTVHKWN KLSATNVDED VRVMTRKSVD  540
DPGEPPGIVL SAATSVWLPV SPQRLFDFLR DERLRSEWDI LSNGGPMQEM AHIAKGQDHG  600
NCVSLLRASA MNANQSSMLI LQETCIDAAG SLVVYAPVDI PAMHVVMNGG DSAYVALLPS  660
GFAIVPDGPG SRGPMTSNGP ILANGPTRGG GPAHRVGGSL LTVAFQILVN SLPTAKLTVE  720
SVETVNNLIS CTVQKIKAAL QCEN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320755.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2R6QS660.0A0A2R6QS66_ACTCH; Homeobox-leucine zipper protein like
STRINGPOPTR_0014s07130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]