PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn374151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 411aa    MW: 46225.7 Da    PI: 6.387
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn374151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.2e-081659340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + +k+++++C  ++ +lC++C  + H+       H++v
  Achn374151 16 ARACDGCIRKRARWYCPADDAFLCQSCDGSVHSAnplasrHKRV 59
                578*****************************668888888876 PP
2CCT68.12.3e-23353396144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Achn374151 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 396
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1681461IPR000315B-box-type zinc finger
PfamPF006434.5E-61659IPR000315B-box-type zinc finger
CDDcd000218.60E-81759No hitNo description
PfamPF062036.8E-18353395IPR010402CCT domain
PROSITE profilePS5101716.083353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVPNKKLANA VGGRTARACD GCIRKRARWY CPADDAFLCQ SCDGSVHSAN PLASRHKRVH  60
LKTSSLKDES NSENSVPSWV RGFTRKARTP RGHRKPKSEE PMLNSHSPVP ELGCGESSNE  120
ENEEQLLYRV PVFDPFELCK STNEAETRVS QEKDMSQEFG HSGSSLGFQP SEMELAEFAA  180
DVESMLGKGL DEESFDMEAL GILDCREREV KEGCLGEGRV KVEEDDEEDK EYFITNHVAA  240
GEREPFELNF DYDSPVMCEE GESKVGARER IAEDREGEAG DVKFKKKVLL RLDYDGVITA  300
WADQRSPWTG DRPEVDPIEC WPHWMGSCGT IHHHYGDIMG GIGGHNGTVD SGREARVSRY  360
REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRASFAA PSSAFPLVTK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363379RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088323.11e-173zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD08e-97COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2R6PH120.0A0A2R6PH12_ACTCH; Zinc finger protein like
STRINGVIT_01s0011g03520.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-91B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]