PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn372901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 458aa    MW: 51990.9 Da    PI: 7.6797
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn372901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-13331061796
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +p kf+++ g++   +   tl++++g +W+v l  +k +g++++t+GW eFv+ + + +g  ++F+++g+ +f  +v +
  Achn372901  33 KIPEKFTKKLGNE--LPAIATLTTPNGCVWQVGL--KKIDGKVWFTNGWHEFVERQSIHVGYLLIFTYEGNLSF--RVNI 106
                 59*****999855..8999***************..********************************998777..4544 PP
2B358.89.5e-193564331899
                 --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +p +fae++ gg++     +tl+ ++g++W v++ +r +s    l+kGW eFv++n+L+egD+++F+l++ +e  l+v++fr+
  Achn372901 356 MPASFAEKYlGGIQG---FITLQVSNGEKWPVRCMWRDGSA--KLSKGWPEFVSENRLEEGDVCIFELIRVEEIVLNVTIFRA 433
                 699******977744...49**************7766665..5*************************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-724110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1831108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1833108IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-1434108No hitNo description
PfamPF023627.0E-1134106IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98434110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-22320433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-21322432IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-20326432No hitNo description
SMARTSM010192.5E-15346434IPR003340B3 DNA binding domain
PfamPF023621.7E-17356433IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126356434IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTEGLSCSDP QGSCPTNLVE LTLECKFVLM PQKIPEKFTK KLGNELPAIA TLTTPNGCVW  60
QVGLKKIDGK VWFTNGWHEF VERQSIHVGY LLIFTYEGNL SFRVNIYNMA TAEIKYQGNA  120
LTSNEGPNCN SRCPVFYRGE AENNDLVDIF DSISHPPWQT LASRENKVLD GTVDDRKDSK  180
SYDPRLRQNL EKAPVAYAQY AGYSFNGTEI TNSKYKSQVG NSHVDIAQSA ARSTRDIGIQ  240
CTSSELMKFE YEFRLHSLNQ RPDLTRKRKR GVGPHEHESS AAHRSEVQSP RSETSCRGFY  300
RRSRVVTPEE KEKVLGESKM FQSENPFCRV ILRRSYVYKG IGLIFYFRIF VPEQHMPASF  360
AEKYLGGIQG FITLQVSNGE KWPVRCMWRD GSAKLSKGWP EFVSENRLEE GDVCIFELIR  420
VEEIVLNVTI FRAVEDGGPV NQLPMEHLGR TGQLTFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-3730243523144B3 domain-containing transcription factor VRN1
4i1k_B5e-3730243523144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102012.11e-171B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_028102013.11e-171B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2R6RC290.0A0A2R6RC29_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-39related to vernalization1 1