PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn372131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 298aa MW: 31290.9 Da PI: 5.5164 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66 | 1.3e-20 | 31 | 83 | 32 | 84 |
TCP 32 fFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 +F+L++eLG+++d++tieWLl q++pai+++tgt++++a++++ + s s+++ Achn372131 31 VFQLTRELGHKSDGETIEWLLHQSEPAIIAATGTGTIPANFSTLNGSIRSGGT 83 8**************************************99944444444442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 13.126 | 1 | 61 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.4E-19 | 31 | 100 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEIMLQATLR VIVHNDLPPH PTISGYSLVM VFQLTRELGH KSDGETIEWL LHQSEPAIIA 60 ATGTGTIPAN FSTLNGSIRS GGTTASAPPS KSPVHGGGAT MLGFTGGGLE EFSGEDFMKK 120 RFKEDITSAA EPDRTGMLDR EPCSDPNPGS FRQSFLPAPA MWAVGPATSN GGGEGFWKLP 180 AATALVGAGQ PEHQMWPYKG TPVQRIGVFE FPGSGRFSPV HLVPQAQPVQ QRGLGMSETR 240 GMGNLGSISV NAFSGGGGGG GGRVKLGMNL EQHHHENHQT EQPEASESAD ETPEDSP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027094718.1 | 1e-82 | transcription factor TCP23-like | ||||
TrEMBL | A0A2R6RP68 | 1e-142 | A0A2R6RP68_ACTCH; Transcription factor like | ||||
STRING | XP_009624724.1 | 6e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 5e-33 | TCP family protein |