PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn371481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 343aa MW: 36758.4 Da PI: 8.7076

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn371481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ Fs++ L H++ H Achn371481 114 FTCDYCKREFSTSQALGGHQNAH 136 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-5	105	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.41E-6	110	141	No hit	No description
Pfam	PF13912	3.0E-7	113	138	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.697	114	141	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	116	136	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGSDKYPSDA SSIPAASKGP LPLPQPRKDN KMKMKIQQTA AEGGLEGVCD AAEHAKPTEQ 60 NQSRLFLGLK LSPNDDDHGS KLYLFNANHV GSFSQGSESP NEGKKRTREG TRVFTCDYCK 120 REFSTSQALG GHQNAHKQER ALAKKQQEME QAGLGPFGHL PIPYPYYSYN SPNNYTPPTP 180 TPQQLHHHHV SLLYGSGSGS GSGFGFGSGS GSYTNVSSSS SSLGVRMDQS MIHKPSPSTF 240 PWSTLTDRFG QHNGWSFLGT SVYDRLMESF QSQMNGGFGG PGLSRSSYPS SSSSYRFEGN 300 GVVLGGGGNF GGTKPTNDGD KNRGPRAWSE DDASGIDLNL KL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGSDKYPSDA SSIPAASKGP LPLPQPRKDN KMKMKIQQTA AEGGLEGVCD AAEHAKPTEQ  60
NQSRLFLGLK LSPNDDDHGS KLYLFNANHV GSFSQGSESP NEGKKRTREG TRVFTCDYCK  120
REFSTSQALG GHQNAHKQER ALAKKQQEME QAGLGPFGHL PIPYPYYSYN SPNNYTPPTP  180
TPQQLHHHHV SLLYGSGSGS GSGFGFGSGS GSYTNVSSSS SSLGVRMDQS MIHKPSPSTF  240
PWSTLTDRFG QHNGWSFLGT SVYDRLMESF QSQMNGGFGG PGLSRSSYPS SSSSYRFEGN  300
GVVLGGGGNF GGTKPTNDGD KNRGPRAWSE DDASGIDLNL KL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6Q1F0	0.0	A0A2R6Q1F0_ACTCH; Zinc finger protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	2e-17	C2H2 family protein