PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn371351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 280aa    MW: 31022.7 Da    PI: 8.6263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn371351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091861344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT e d+ + +a + +  +   +W++Ia+++  g++ +++k+++
       Achn371351 18 SWTREQDKAFENALAIYSEDsvdRWEKIAAMVL-GKSVEEIKNHY 61
                     7*******************************9.**********9 PP
2Myb_DNA-binding44.14.6e-14129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
       Achn371351 129 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVSRTPTQVASHAQKY 173
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-51165IPR009057Homeodomain-like
PROSITE profilePS512939.571469IPR017884SANT domain
SMARTSM007171.6E-91567IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131773IPR009057Homeodomain-like
CDDcd001674.46E-91865No hitNo description
PfamPF002491.4E-71861IPR001005SANT/Myb domain
PROSITE profilePS5129418.942121178IPR017930Myb domain
SuperFamilySSF466891.79E-16124177IPR009057Homeodomain-like
SMARTSM007174.3E-11126176IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-17127176IPR006447Myb domain, plants
CDDcd001676.29E-11129174No hitNo description
PfamPF002499.0E-12129173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-11129172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLYPNRRMST NRTCNSSSWT REQDKAFENA LAIYSEDSVD RWEKIAAMVL GKSVEEIKNH  60
YVILLEDINA IESGSVPLPH YVPSVNDYTN LSSDFGVSKM GSHYEQMQSD SHHGGKTSRS  120
DQERRRGIAW TEEEHRLFLL GLEKYGKGDW RSISRNFVVS RTPTQVASHA QKYFIRLSLA  180
NKEGRRSSIH DITSIGGGDT STPRGPITGQ MDRFATAGSS SCIGKHAPSS EPEIGTYVPP  240
NIVESIDTPM GPPPTALISR TPTNMASMTY LRPRPSGQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1819811173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094516.11e-127transcription factor SRM1
RefseqXP_028094517.11e-127transcription factor SRM1
RefseqXP_028094518.11e-127transcription factor SRM1
RefseqXP_028094519.11e-127transcription factor SRM1
SwissprotQ9FNN61e-82SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2R6S2X60.0A0A2R6S2X6_ACTCH; Transcription factor DIVARICATA like
STRINGXP_008360003.11e-101(Malus domestica)
STRINGXP_008366961.11e-101(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-85MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]