PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn370751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 699aa MW: 76061 Da PI: 6.3479

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn370751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310.5	3.8e-95	336	697	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++L+++Ae + +g+++ a+ +Larl+++ sp ++p+qR+a+yf+eAL+ l+ ++ + lpp++ ++ + ++ a+kl+se+sP+++f ++t Nqa Achn370751 336 DQLFKAAELILAGNFSHAHGILARLNHQLSPLAKPFQRAAFYFKEALQLPLLM--PSPATLLPPKSPTPIEAMFKMGAYKLLSELSPLVQFMNFTSNQA 432 68************************************************9..6666669999999999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrvk 197 + ea+ +e+vH+iDfdi+ G+QW++++q+L R+ +g sl+iT+++sp++++ el ++e+L++fA+e gv+f+ +++ + + ++ + +r + Achn370751 433 LIEALGDAEQVHVIDFDIGFGAQWASFMQELPGRSnRGCLSLKITAFASPSTHHPLELGLMHENLTQFANESGVNFKLEIVNLDifDPSAYSAPLFRSS 531 ******************************966777************************************9444222233344456888 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++Ea++Vn+ + + + l+ ++++++vk+lsPk+vv e+ +++++ +F +++l+al+yy +l+ds++a +se +k+Er+l++++i++ Achn370751 532 EKEAIVVNFPIWACS-----GRLSV-LPSLVRFVKQLSPKIVVSLERKCERSDLPFSHHILNALQYYEVLLDSIDAA-NVNSEITNKIERFLIQPKIES 623 8****994433.....33333.668*****************************************666.5699************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v+ + + + +W++ + +aGF+pvp+s++a++qa+++l++ +++g++ve++++slvl+W++++L+s+SaWr Achn370751 624 IVSGRFHA----PDPMPHWKALFASAGFSPVPFSNFAETQAECVLKRSQVRGFNVEKRQASLVLYWQRQELMSASAWR 697 987666....9****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.513	308	677	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-92	336	697	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MQINLQGKGV AELAGFVSLS SPEAKWKKEA SNEPISVLDT RRSPSPSTST STSTLSSSLG 60 GGATAGDGSG SLAAVSDINP LQNGPVSATV LESGGGRKDE WAAELQPIPT GQEVAGGDRF 120 GLGLEAWDSL LSESGQDHSL FRWIASEIDD GSFTLKQLLQ STYPTEIDAN VAPAVVDLSS 180 GLLNASAGGS NVGNFKAPSN NNNVNPQIPG MGSALSNLLP SGVIYQQQEL ETLDSKPQIF 240 NPQAFASQQQ FQVSHNQNSF PSPQQDPLRL LQPHSKRQNL GVSDPFSQTP RPPFFDPGHE 300 LLLLRNQQLG LAQQEAVGGG QAAVHHHHRH QQVVYDQLFK AAELILAGNF SHAHGILARL 360 NHQLSPLAKP FQRAAFYFKE ALQLPLLMPS PATLLPPKSP TPIEAMFKMG AYKLLSELSP 420 LVQFMNFTSN QALIEALGDA EQVHVIDFDI GFGAQWASFM QELPGRSNRG CLSLKITAFA 480 SPSTHHPLEL GLMHENLTQF ANESGVNFKL EIVNLDIFDP SAYSAPLFRS SEKEAIVVNF 540 PIWACSGRLS VLPSLVRFVK QLSPKIVVSL ERKCERSDLP FSHHILNALQ YYEVLLDSID 600 AANVNSEITN KIERFLIQPK IESIVSGRFH APDPMPHWKA LFASAGFSPV PFSNFAETQA 660 ECVLKRSQVR GFNVEKRQAS LVLYWQRQEL MSASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MQINLQGKGV AELAGFVSLS SPEAKWKKEA SNEPISVLDT RRSPSPSTST STSTLSSSLG  60
GGATAGDGSG SLAAVSDINP LQNGPVSATV LESGGGRKDE WAAELQPIPT GQEVAGGDRF  120
GLGLEAWDSL LSESGQDHSL FRWIASEIDD GSFTLKQLLQ STYPTEIDAN VAPAVVDLSS  180
GLLNASAGGS NVGNFKAPSN NNNVNPQIPG MGSALSNLLP SGVIYQQQEL ETLDSKPQIF  240
NPQAFASQQQ FQVSHNQNSF PSPQQDPLRL LQPHSKRQNL GVSDPFSQTP RPPFFDPGHE  300
LLLLRNQQLG LAQQEAVGGG QAAVHHHHRH QQVVYDQLFK AAELILAGNF SHAHGILARL  360
NHQLSPLAKP FQRAAFYFKE ALQLPLLMPS PATLLPPKSP TPIEAMFKMG AYKLLSELSP  420
LVQFMNFTSN QALIEALGDA EQVHVIDFDI GFGAQWASFM QELPGRSNRG CLSLKITAFA  480
SPSTHHPLEL GLMHENLTQF ANESGVNFKL EIVNLDIFDP SAYSAPLFRS SEKEAIVVNF  540
PIWACSGRLS VLPSLVRFVK QLSPKIVVSL ERKCERSDLP FSHHILNALQ YYEVLLDSID  600
AANVNSEITN KIERFLIQPK IESIVSGRFH APDPMPHWKA LFASAGFSPV PFSNFAETQA  660
ECVLKRSQVR GFNVEKRQAS LVLYWQRQEL MSASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-31	357	697	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028093152.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-108	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2R6QNM3	0.0	A0A2R6QNM3_ACTCH; Scarecrow-like protein
STRING	POPTR_0003s11020.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-110	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]