PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn370001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 574aa    MW: 62418.1 Da    PI: 4.6709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn370001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-173784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
       Achn370001 37 KGPWTSAEDTILVDYVRKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 84
                     79******************************************9986 PP
2Myb_DNA-binding47.25e-1590133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eE+ l++++++ +G++ W++ a++++ gRt++++k++w++
       Achn370001  90 KGAITPEEERLIIELHATMGNK-WARMAAHLP-GRTDNEIKNYWNT 133
                      6888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4183284IPR017930Myb domain
SuperFamilySSF466891.46E-2936131IPR009057Homeodomain-like
SMARTSM007171.0E-143686IPR001005SANT/Myb domain
PfamPF002493.3E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-233891IPR009057Homeodomain-like
CDDcd001672.55E-113984No hitNo description
PROSITE profilePS5129424.98385139IPR017930Myb domain
SMARTSM007174.4E-1689137IPR001005SANT/Myb domain
PfamPF002494.7E-1490133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2592138IPR009057Homeodomain-like
CDDcd001671.27E-1194133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MTNESDNEMI SKDCTGSPLM DEGNCDGSAS GGVVLKKGPW TSAEDTILVD YVRKHGEGNW  60
NAVQKHSGLF RCGKSCRLRW ANHLRPNLKK GAITPEEERL IIELHATMGN KWARMAAHLP  120
GRTDNEIKNY WNTRIKRRQR AGLPLYPPEV CLQALQENEQ NRNSNGDRGQ HDLLQANSYE  180
IPDVIFDSLK TNQGVLPYVP ELPDISASSI LLKGLGSSQY YGFVPPVVHR QKRLRESATS  240
YSGYDGSTRN EPPPFDHIPD DSCDNITTQS FGLSFPCDPD PITKNLLPFG GNQGSHSLLN  300
GNFSASKPAT PVAVKLELPS LQYPETDFSS WGSSSPPALL ESVDAFIQSP PPSGTDCLSP  360
RNSGLLDALL HEAKALSAKN HVSDKTSNSS TTSHTPGDVT HGSSLDTSKT KWEEYSESIS  420
PLGNSAASIF SERTPVSVSE NSLDEYPPAE TFPESCITFD LIVGSNMMLE AVEQKVWTLD  480
GEKNETATQL DFSRPDALLD SCWLGQSVTY ANDQEGVTTD AAAEAAMALG DDDSRNNDYK  540
PHMGAGTALN QGWGFGSCTW NNMPSVCQIS ELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31351385107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099441.10.0transcription factor GAMYB-like
TrEMBLA0A2R6R1D90.0A0A2R6R1D9_ACTCH; Transcription factor GAMYB like
STRINGXP_008231582.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-118myb domain protein 33