PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn368801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 230aa MW: 24797.6 Da PI: 4.9115 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.6 | 1.4e-27 | 41 | 133 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++e+l+Li+++r e+r+r g+ +++p+W++vs++++ +g++r+p+qC+++w+nl+++yk+ike+e + ++e++s +++ ++l+ Achn368801 41 RWTRHEILVLIQGKRAAENRVRPGRasgsgqvQAEPKWAAVSSYCKNHGVNRGPVQCRKRWSNLAGDYKRIKEWELQVRDEAESFWAMRNDLR 133 8*********************8766677888**********************************************999999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.4 | 41 | 105 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 41 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.0E-13 | 41 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MALEPLSLAS TPVDAVTTGG DGSPPTADGG DDVGRAPRLP RWTRHEILVL IQGKRAAENR 60 VRPGRASGSG QVQAEPKWAA VSSYCKNHGV NRGPVQCRKR WSNLAGDYKR IKEWELQVRD 120 EAESFWAMRN DLRRERKLPG YFDREVYDMI DGGTAAIETE AVEDSGRSAA AEDRLFSDFE 180 QTAPKEGGVG VGAGAEKVFA TAEVGPTPAP VPISELEPFG NDFCGLGWV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887986.1 | 5e-93 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 7e-74 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2R6P2V2 | 1e-150 | A0A2R6P2V2_ACTCH; Trihelix transcription factor | ||||
STRING | evm.model.supercontig_2461.1 | 2e-92 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-76 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|