PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn368431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 633aa    MW: 69623.4 Da    PI: 5.4013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn368431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.8e-11323368755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Achn368431 323 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 368
                 899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.192225299IPR001471AP2/ERF domain
SMARTSM003801.5E-4249305IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-8252299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-6269298IPR001471AP2/ERF domain
PROSITE profilePS5103216.858317376IPR001471AP2/ERF domain
PfamPF008471.5E-6323368IPR001471AP2/ERF domain
CDDcd000187.38E-21323378No hitNo description
SMARTSM003802.4E-26323382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-15324377IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14324378IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MASTNNWLDF SLSPQEHQNP QDHSQNSVSR FGFNSDEISG TDVTSDQCFD LTSDSTVLPS  60
LNLPAPFGIL EAFNRNNNHS HSQDWNNNYK TTTDFSMLMG TNNHSLENQG PKLENFLGGH  120
SFAHHGHYMY PLPEAADTAN NNNSGATTTI IGLSTIKSWL RNQPTPTPAQ PENKNDQGCG  180
VEGSNGNLSL SMSSESQTGS PLPLLAVSGG NGSGGGESST SLDSKQKGID GQEDMKPIYG  240
TIVVEERDRL VKEGKFQLMI CDTVFDKKIG GYDKEEKAAR AYDLAALKYW GTTTTTNFLV  300
GNYEKEIEEM KHMTRQEYVA SLRRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  360
IAAIKFRGLN AVTNFDMSRY DVKSILESST LPIGGAAKRL KDAEQAEMTM DTRKRTTDEI  420
ITTSHLTEGT SNVYGTTHYN WPTVAFQQAQ PFSMHYPYGQ QRVWCKQEQD EIPPHTYQDL  480
NQIQLGNTHN YFQPNNVLHN LMSLDSASLD HSSGSNSTVY SNGVGDGGYV MPITTVIAQE  540
GNNTQGNSGF GDSEVKAYGY ETVFGSSDAY HGRHLYYLPQ QSQGGIGKAA SLYDQGSMCN  600
NWVPTAVPTL APRANNMALC HGAQTFTMWN DT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2R6PKQ60.0A0A2R6PKQ6_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.19e-87AP2 family protein