PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn367411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 268aa    MW: 30391.7 Da    PI: 10.2894
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn367411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.71.1e-1124952086
    trihelix 20 rlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                +l+rg+l++++W+ev++++     +  + +r+ +qCk++++ l+k+yk +k++ ++ + + +s++p+f +l+
  Achn367411 24 ELNRGNLRQKHWQEVADAVnachgHLWKARRTDIQCKNRIDTLKKKYKIEKARVSESNGRYTSKWPFFVRLD 95
                6899***************96655555679***********************999999999******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-191797No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVDNGGLVDG GRPEVVAWGG RYVELNRGNL RQKHWQEVAD AVNACHGHLW KARRTDIQCK  60
NRIDTLKKKY KIEKARVSES NGRYTSKWPF FVRLDSLIGS LYKPSPSLTA SHRKTPLALP  120
PSPSSVPVGP RSKRPAGKAV DSSFFRRNFA VVAAAAEEAE ERSSAGDGER SGPEWFGKLA  180
EAIERLGEIY ERVEEAKQIQ MIELEKQRMK FAKDLEIQRM KLFMDSQIQL KKIKRAKQSS  240
ESGESFSLIF FNYLFKISIN PYRLDEQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065493.16e-99trihelix transcription factor ASIL2
TrEMBLA0A2R6QX551e-164A0A2R6QX55_ACTCH; Trihelix transcription factor
STRINGXP_009760894.12e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-55sequence-specific DNA binding transcription factors