PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn366791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 297aa    MW: 33251.2 Da    PI: 9.0933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn366791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl
       Achn366791 17 RGPWTPEEDELLSKYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 64
                     89******************************99************97 PP
2Myb_DNA-binding48.42.1e-1570115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
       Achn366791  70 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 115
                      678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0741264IPR017930Myb domain
SuperFamilySSF466895.14E-2914111IPR009057Homeodomain-like
SMARTSM007171.0E-131666IPR001005SANT/Myb domain
PfamPF002491.3E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-221871IPR009057Homeodomain-like
CDDcd001671.03E-111964No hitNo description
PROSITE profilePS5129424.81765119IPR017930Myb domain
SMARTSM007171.7E-1469117IPR001005SANT/Myb domain
PfamPF002496.5E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2472120IPR009057Homeodomain-like
CDDcd001678.80E-1275115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRQPSSKTNP SKVGMKRGPW TPEEDELLSK YINKEGEGRW RTLPKRAGLL RCGKSCRLRW  60
MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY WNTHLRKKLI  120
NQGIDPTTHK PLSNNPNPNS DKPSSSSSTS KANQMISSNP PNPNLVISPS LKNPVISAHS  180
DQDLINKGKS TGYYTDDHGL RSNNTMNICN QEDDDDINYC TDDVFSSFLN SLINEDVFNS  240
TQYQVQQQIN GIIVPAAGDA SSDPLISASQ NFAFGAGWDA PIMSYDPKRF LDHAQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25171194105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-241711958159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-241711958159MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-251511925128MYB TRANSFORMING PROTEIN
1mse_C5e-25171194105C-Myb DNA-Binding Domain
1msf_C5e-25171194105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074711.11e-126transcription repressor MYB5-like
SwissprotQ388503e-87MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2R6PRG80.0A0A2R6PRG8_ACTCH; Transcription repressor like
STRINGEOY089081e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-84myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]