 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Achn366731 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 334aa MW: 36635.9 Da PI: 9.2183 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Achn366731 | genome | IKGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 299.9 | 9.5e-92 | 65 | 327 | 23 | 301 |
GAGA_bind 23 nlglqlmssiaerdaki.....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtks 107
+ ++lmss+ erd+k+ +++++ + + ++ +++rd m++ rd+++++ ++k+l++l+ + + + + ++ +
Achn366731 65 VFVVKLMSSVGERDTKPflsgrEHAHAGVLSANGGYHPRDcvvsetplhMDY-VRDSWVNN--------RDKFLNMLPGNSN--------YAMYPEPSA 146
45689**************9954455668999****************9999.99***999........789******6654........788999999 PP
GAGA_bind 108 idslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDes 206
+s++ l+++ + + +e + + +ke +++kkr ++pk++k kk+kk ++ +++ +++ +r+k +kk++d+v+ng+++D+s
Achn366731 147 SHSMHI-----LQPPDLSKDGRVGIEDP------NIVKEGSSSKKRTGINTPKAPKVKKAKKGRSLLNENGDSSI--QRVKPTKKNVDVVINGIDMDIS 232
999999.....44444432222233344......44445555555666678999999999997777766666655..79******************** PP
GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++PvPvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrg+RiagrKmS gafkk+LekLaaeGyd+ p+DL++hWAkHGtnkfvtir
Achn366731 233 GIPVPVCSCTGSPQQCYRWGSGGWQSACCTTTISIYPLPMSTKRRGSRIAGRKMSMGAFKKVLEKLAAEGYDFCDPIDLRTHWAKHGTNKFVTIR 327
**********************************************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGEEYVVKLG NQNSLGLYKG LVPLWGRQIP CIEGTNSCES QNFTDVLYLD CVSKKYLEEV 60
SSCSVFVVKL MSSVGERDTK PFLSGREHAH AGVLSANGGY HPRDCVVSET PLHMDYVRDS 120
WVNNRDKFLN MLPGNSNYAM YPEPSASHSM HILQPPDLSK DGRVGIEDPN IVKEGSSSKK 180
RTGINTPKAP KVKKAKKGRS LLNENGDSSI QRVKPTKKNV DVVINGIDMD ISGIPVPVCS 240
CTGSPQQCYR WGSGGWQSAC CTTTISIYPL PMSTKRRGSR IAGRKMSMGA FKKVLEKLAA 300
EGYDFCDPID LRTHWAKHGT NKFVTIRGLS NAL*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
