PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn366301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 344aa    MW: 38179.8 Da    PI: 6.3774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn366301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-171665255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae+Aa+a+++a+  l+g
  Achn366301 16 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEDAARAYDEAACLLRG 65
                799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-191673IPR016177DNA-binding domain
SMARTSM003802.3E-361679IPR001471AP2/ERF domain
PfamPF008475.9E-121665IPR001471AP2/ERF domain
CDDcd000184.76E-311672No hitNo description
Gene3DG3DSA:3.30.730.101.2E-271673IPR001471AP2/ERF domain
PROSITE profilePS5103219.4141673IPR001471AP2/ERF domain
PRINTSPR003672.5E-71728IPR001471AP2/ERF domain
PRINTSPR003672.5E-73955IPR001471AP2/ERF domain
PROSITE profilePS5092015.219236326IPR018108Mitochondrial substrate/solute carrier
SuperFamilySSF1035064.32E-12242319IPR023395Mitochondrial carrier domain
Gene3DG3DSA:1.50.40.104.2E-10244325IPR023395Mitochondrial carrier domain
PfamPF001533.5E-6244325IPR018108Mitochondrial substrate/solute carrier
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPKFKGIRGR GNGNNKFVGV RQRPSGRWVA EIKDTTQKIR MWLGTFETAE DAARAYDEAA  60
CLLRGSNTRT NFITHVSHDS PLASRIRDLL NTKKAGKKPS ENIYGGINSS NTYNSHTPPI  120
NTTTNIPSTS TSSCTISTSD NETTSSGKLQ DTQLFDDAYK PDLSNCIEEF ELGTSQSGMF  180
GQAFDRFPFN QELLELPRNV VSNEASELEF SEFDRMKVER QISASLYAMN GVQEYMETVH  240
DPRASAVSGF FPSARSLPFD YVKTQIQKMQ PDAEGKYPYA GSLDSAIKTL KAGPPLKFYT  300
GFPVYFVRIA PHVTLTWIFL NEIEKLEAAI GLQTQLIEEN SSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14572371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281619.11e-102PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotA0A1X9PY886e-91ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A2R6QGT91e-178A0A2R6QGT9_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
STRINGVIT_08s0007g07250.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-30related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]