PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn364941
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 467aa    MW: 52027.9 Da    PI: 6.7401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn364941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.64.7e-110954652374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                 v lL++c eav+ +d+ +a+alL++l+      g+++qR+a++f+++La rla   + + +  + p+ +  ++ s+++  al l +e++P ++f+h++a
  Achn364941  95 VYLLVSCTEAVACRDKPRASALLSELRASTLVFGSSFQRVASCFVQGLADRLALVRPlGAVGFVePTMNLMDHASDKKEEALGLVYELCPHIQFGHFVA 193
                 679*************************************************98433133333323333334448888899999*************** PP

        GRAS  99 NqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 N+aIlea+ege+ vH++D+++s    +G QW  L+q+La+R+++p   lRiTgvg      +e+   +g+ L+ +A+++g+++ef+v ++++le+l+++
  Achn364941 194 NSAILEAFEGESFVHVVDLGMSlglaHGYQWRQLIQSLADRAGPPLrCLRITGVGL----CAERFLVIGDELEAYAQSMGIHLEFSV-IESNLENLRPK 287
                 ******************98763333789************9888669********....9*************************9.799******** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +++ k  E+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ F+ rf+eal+yysa+fdsl+a lp+ +  r+k+E+++++
  Achn364941 288 DIKQKDSEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFVGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFFFA 383
                 **********************88877777...8***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+  +++qak  l k+k  dgy++ ee+g+lvlgWk++p+v++S+W+
  Achn364941 384 EEIKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPAPLK--IVAQAKQFLGKIKaCDGYTILEEKGCLVLGWKSKPIVAASCWK 465
                 *************************************95..899***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.23768446IPR005202Transcription factor GRAS
PfamPF035141.6E-10795465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAYYPHPYLP LLENTSTTLF PKFSDETVGH KRLKRTTSTN SLNGMSRLQF RDHIWTYSQR  60
YLAAEAVEAA AAAVMGSSED GKTEEDEAGD EMRLVYLLVS CTEAVACRDK PRASALLSEL  120
RASTLVFGSS FQRVASCFVQ GLADRLALVR PLGAVGFVEP TMNLMDHASD KKEEALGLVY  180
ELCPHIQFGH FVANSAILEA FEGESFVHVV DLGMSLGLAH GYQWRQLIQS LADRAGPPLR  240
CLRITGVGLC AERFLVIGDE LEAYAQSMGI HLEFSVIESN LENLRPKDIK QKDSEVLVVN  300
SILQLHCVVK ESRGALNSVL QIIHELSPKV LVLVEQDSSH NGPFFVGRFM EALHYYSAIF  360
DSLDAMLPKY DTRRAKMEQF FFAEEIKNIV SCEGPARVER HEKVDQWRRR MSRAGFQPAP  420
LKIVAQAKQF LGKIKACDGY TILEEKGCLV LGWKSKPIVA ASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5810146426378Protein SCARECROW
5b3h_A9e-5910146425377Protein SCARECROW
5b3h_D9e-5910146425377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063309.10.0DELLA protein RGL1-like
TrEMBLA0A2R6QGH70.0A0A2R6QGH7_ACTCH; DELLA protein
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-79RGA-like 1