PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 444aa    MW: 49904.3 Da    PI: 6.095
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.38e-91564392373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 
                 ++lL++cA+a++++d++l+q++L+ l+++a++dgd++qRl+  f++AL ar ar  s+++k l +++++    ++++++ +l  f++++P+++f++ +a
  Achn363651  56 EQLLVHCATAIETNDATLVQQILWVLNNIAASDGDSNQRLTCGFLRALVARAAR--SGTCKVLMTTAANLAIATHKFSIIELagFVDLTPWHRFGFTAA 152
                 79****************************************************..8999999888888766777777777788*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakrle 187
                 N aIl+aveg   vHi+D+++++++Q p+L++++a+R egpp + +T+ g  e +      ++ee+g +L +fA++ +v++ef+v+        ++ +e
  Achn363651 153 NAAILDAVEGFPVVHIVDLSLTHCMQIPTLIDSIANRLEGPPLVMLTVAGLTEDVppmLDLSYEELGTKLVNFAKSRNVTMEFRVIpssssdgFSTFIE 251
                 ***********************************************9999777788888999**********************97764444444445 PP

        GRAS 188 dleleeL.rvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                 ++++++L +  ++Eal++n++++lh++++es+ ++    +r+ +L++v+sl P+++v+v+++ad +s +++ r+  a++y +  +d++++ lpr se+r
  Achn363651 252 QIKIQNLlHSMNREALVINSHMMLHYIPEESLLSSPnasYRTIFLEAVRSLDPTIMVLVDEDADFTSRNLVIRLRAAFNYLWIPYDTVDTFLPRGSEQR 350
                 555555424445****************998644333559*********************************************************** PP

        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +++E+  l ++i+nvva+ega+r+er e + +W +r+ +aGF+ v++se+ + +++++l k++  g+ ++ e++ lvl+Wk++++v++++W
  Achn363651 351 KWYEAD-LCWRIENVVAAEGAQRVERLEPKWRWVQRMWSAGFRHVRFSEEGVGEVRSMLDKHA-AGWGLKREEEDLVLTWKGHNVVFATVW 439
                 ******.99******************************************************.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.92329421IPR005202Transcription factor GRAS
PfamPF035142.8E-8856439IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPRYDYESRS FPTLCSNLLT PPPPFHAMTS KSQIRPWLGF STSKALGNFG DANYMEQLLV  60
HCATAIETND ATLVQQILWV LNNIAASDGD SNQRLTCGFL RALVARAARS GTCKVLMTTA  120
ANLAIATHKF SIIELAGFVD LTPWHRFGFT AANAAILDAV EGFPVVHIVD LSLTHCMQIP  180
TLIDSIANRL EGPPLVMLTV AGLTEDVPPM LDLSYEELGT KLVNFAKSRN VTMEFRVIPS  240
SSSDGFSTFI EQIKIQNLLH SMNREALVIN SHMMLHYIPE ESLLSSPNAS YRTIFLEAVR  300
SLDPTIMVLV DEDADFTSRN LVIRLRAAFN YLWIPYDTVD TFLPRGSEQR KWYEADLCWR  360
IENVVAAEGA QRVERLEPKW RWVQRMWSAG FRHVRFSEEG VGEVRSMLDK HAAGWGLKRE  420
EEDLVLTWKG HNVVFATVWV PIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-425044182474Protein SHORT-ROOT
5b3h_B9e-435044128420Protein SHORT-ROOT
5b3h_E9e-435044128420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240744.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-176SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2R6RL080.0A0A2R6RL08_ACTCH; Scarecrow-like protein
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-178GRAS family protein