PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn363471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 27002.9 Da PI: 4.8245 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.1e-08 | 18 | 41 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 ++W+ I++ ++ gRt++++k++w++ Achn363471 18 HRWSIISAQLP-GRTDNDIKNYWNT 41 57*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.424 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 9.34E-6 | 15 | 43 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 16 | 53 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.41E-8 | 16 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-6 | 17 | 41 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MATLLSRKDQ TCPSFETHRW SIISAQLPGR TDNDIKNYWN TKLKKKLMGN QRKEQQARRA 60 KQEMKRESEI SMASDAMNTI IPYWPEPNLS MPTVKLNQEN HHLKDQEFLK KFPGSIEGRF 120 IDDGQETNIN SENFRYPFDN STTQDQLYDN SINTFASTPS QVPNIFEGFN NYPIEIGELV 180 CNTPQQFDDF SLVDMVNGTS SGESTHWGDT SSEVLYPAMV SNYGLGYSNS PVNGGVY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028082936.1 | 7e-63 | transcription factor RAX3 | ||||
TrEMBL | A0A2R6RKY1 | 1e-161 | A0A2R6RKY1_ACTCH; Transcription factor like | ||||
STRING | VIT_00s1352g00010.t01 | 5e-56 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-14 | myb domain protein 36 |