PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn362911

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 1526aa MW: 172427 Da PI: 5.0925

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn362911	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le+ ++++ yp +++r+eL++klgL++rq ++WF+ rR kekk Achn362911 24 PKRQMKTPYQLEILEKTYAMETYPLEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 79 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-19	5	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-16	15	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.358	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	24	79	IPR001356	Homeobox domain
CDD	cd00086	6.75E-14	25	79	No hit	No description
PROSITE profile	PS50827	14.941	457	516	IPR018501	DDT domain
SMART	SM00571	5.5E-20	457	516	IPR018501	DDT domain
Pfam	PF02791	4.6E-16	458	513	IPR018501	DDT domain
Pfam	PF05066	9.4E-13	639	706	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.9E-10	822	865	IPR028942	WHIM1 domain
Pfam	PF15613	9.2E-14	1023	1094	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1526 aa Download sequence Send to blast
MEAVSEGENN KNSDESPIEE PKKPKRQMKT PYQLEILEKT YAMETYPLEA TRAELSEKLG 60 LSDRQLQMWF CHRRLKEKKD LGAKKTKHAG GVEKKGLFDP ARDELMAAER GSNHGSRSGS 120 GSESGSGWSR FDERDDVPMA ATRSHREYLL DEPKIRSDVY ERLIPSNFYD QPVECPSASA 180 PLLLHHNGQL SRGYGIQGQA SCPSLSSQQS KQGLFSSPSG DNNCIPQWES LINMPIDAQD 240 NSQPAGMPDN IDASDRHISN SESGLQIEKK RKSNEARIGS QVDAHEKRIR KELEQQDILR 300 RKREEQMRRE MEKQDRERRK DEERMVREKQ RQQERFEREE RRENERREKF LQKESLKAER 360 RRQKEELRRE KEEARLKAAI ERATTRRIAR ESMELIEDER LELMELAASS KGLPSIISLD 420 YDTLQNLESF RGFLYSFPPK SVQLKRPFSV QPWTDSEENI GNLLMVWRSC ITFADVLGLW 480 PFTLDEFVQA FHDYDSRLLG EIHISLLKLI IKDIEDGART LSNGIGTNQC SSANPEGGHP 540 QIVEGAYVWG FDIRNWKNHL NPLTWPEILR QFALSAAFGP QLKKKSIKRA GFPDNDETKG 600 CQDIISTLRN GAAAENAVAI MQEKGFPLQR RSRHRLTPGT VKFAAYHVLS LEGSKGMNVI 660 ELAHKIQKSG LRDLTTSKTP EASISVALSR DAVLFERTAP STYRVRPPFR KDPADADAIL 720 SAAREKIKRY ENGFLAGEIV DDVERDEHSE AEGAEGPEIY GIGTPNANRN NNNGNEVGIC 780 SGNGKERFLD DVTQNLQNEP DAADNGSNNL NQGDPEIDEG DSGEPWVQGL AEGEYSDLSV 840 EERLKALVTL VGICNEGNSI RSVLEGSNGM LVNFLSFHAE SFLQDRLDAA NALKKQMLAE 900 AQLDKKRIKE ESFPKCNTSF MGIEAETKQT CAAADSSQSP LTAVDNKIRE SPLETKVNEE 960 PSVEAENLQH DNPLPADRMP VEPEASMGQI GSSIQQNGYT AERSRMQLKS YIGHRAEEMY 1020 IYRSLPLGQD RRRNRYWQFV ASASSNDPGS GRIFVESPDG CWRLIDSEKA FDALLESLDT 1080 RGIRESHLHI MLQNIEKSFK ETIRRNSQCA IITDRSGNIG REDAEMDCSP AHSGGDDSPS 1140 STVSGSNTNT CEPSFSFGIE LGKSETEKKA SMERYQEFQK WMWKECFNSS TLCAMKYGEK 1200 RCRPLLEICD FCLDSYKVVN DLCPSCYRSF GDFDDQITLS ELCEDKRKAS PRNSNISKFS 1260 HPSRIRLLRA ILTTIEKYLF ANILFQFFQK LQSRYTFMMN IEDTEQGKHR KEKNSTDLAS 1320 MREIYGHRQK GICGRGRGRG RPQKRFVGSG RQNLSMSSGQ VLRQQGQRTH GQRLTRGRRT 1380 VRRRRIEESA VPETLLGHLG NTGGLKISDI LPRNSSGEEE EEENCGGEEI RQMQIEDADK 1440 RNGLEAVESD ADDQIVEYEY EKWGTGNAMV MSDEDVDGSE DENGFEEIGE ENFEVDVDMN 1500 EDSDGNGDGN ENGSTDQSDS EDFSD*

Sequence ? help Back to Top

Protein Sequence Length: 1526 aa Download sequence Send to blast

MEAVSEGENN KNSDESPIEE PKKPKRQMKT PYQLEILEKT YAMETYPLEA TRAELSEKLG  60
LSDRQLQMWF CHRRLKEKKD LGAKKTKHAG GVEKKGLFDP ARDELMAAER GSNHGSRSGS  120
GSESGSGWSR FDERDDVPMA ATRSHREYLL DEPKIRSDVY ERLIPSNFYD QPVECPSASA  180
PLLLHHNGQL SRGYGIQGQA SCPSLSSQQS KQGLFSSPSG DNNCIPQWES LINMPIDAQD  240
NSQPAGMPDN IDASDRHISN SESGLQIEKK RKSNEARIGS QVDAHEKRIR KELEQQDILR  300
RKREEQMRRE MEKQDRERRK DEERMVREKQ RQQERFEREE RRENERREKF LQKESLKAER  360
RRQKEELRRE KEEARLKAAI ERATTRRIAR ESMELIEDER LELMELAASS KGLPSIISLD  420
YDTLQNLESF RGFLYSFPPK SVQLKRPFSV QPWTDSEENI GNLLMVWRSC ITFADVLGLW  480
PFTLDEFVQA FHDYDSRLLG EIHISLLKLI IKDIEDGART LSNGIGTNQC SSANPEGGHP  540
QIVEGAYVWG FDIRNWKNHL NPLTWPEILR QFALSAAFGP QLKKKSIKRA GFPDNDETKG  600
CQDIISTLRN GAAAENAVAI MQEKGFPLQR RSRHRLTPGT VKFAAYHVLS LEGSKGMNVI  660
ELAHKIQKSG LRDLTTSKTP EASISVALSR DAVLFERTAP STYRVRPPFR KDPADADAIL  720
SAAREKIKRY ENGFLAGEIV DDVERDEHSE AEGAEGPEIY GIGTPNANRN NNNGNEVGIC  780
SGNGKERFLD DVTQNLQNEP DAADNGSNNL NQGDPEIDEG DSGEPWVQGL AEGEYSDLSV  840
EERLKALVTL VGICNEGNSI RSVLEGSNGM LVNFLSFHAE SFLQDRLDAA NALKKQMLAE  900
AQLDKKRIKE ESFPKCNTSF MGIEAETKQT CAAADSSQSP LTAVDNKIRE SPLETKVNEE  960
PSVEAENLQH DNPLPADRMP VEPEASMGQI GSSIQQNGYT AERSRMQLKS YIGHRAEEMY  1020
IYRSLPLGQD RRRNRYWQFV ASASSNDPGS GRIFVESPDG CWRLIDSEKA FDALLESLDT  1080
RGIRESHLHI MLQNIEKSFK ETIRRNSQCA IITDRSGNIG REDAEMDCSP AHSGGDDSPS  1140
STVSGSNTNT CEPSFSFGIE LGKSETEKKA SMERYQEFQK WMWKECFNSS TLCAMKYGEK  1200
RCRPLLEICD FCLDSYKVVN DLCPSCYRSF GDFDDQITLS ELCEDKRKAS PRNSNISKFS  1260
HPSRIRLLRA ILTTIEKYLF ANILFQFFQK LQSRYTFMMN IEDTEQGKHR KEKNSTDLAS  1320
MREIYGHRQK GICGRGRGRG RPQKRFVGSG RQNLSMSSGQ VLRQQGQRTH GQRLTRGRRT  1380
VRRRRIEESA VPETLLGHLG NTGGLKISDI LPRNSSGEEE EEENCGGEEI RQMQIEDADK  1440
RNGLEAVESD ADDQIVEYEY EKWGTGNAMV MSDEDVDGSE DENGFEEIGE ENFEVDVDMN  1500
EDSDGNGDGN ENGSTDQSDS EDFSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	79	RRLKEKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099655.1	0.0	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2R6QA74	0.0	A0A2R6QA74_ACTCH; Homeobox-DDT domain protein
STRING	Migut.H01470.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1