PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn360921

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CPP

Protein Properties

Length: 563aa MW: 62362.9 Da PI: 7.8512

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn360921	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.6	2.5e-13	174	213	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnC+ s+Clk+YCeCf+++ +C+ C+C++C+N+ e+ Achn360921 174 KQKSCNCRYSQCLKLYCECFSRRIYCDG-CNCTNCHNNVEH 213 79************************.******9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.6E-14	173	213	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.763	174	266	IPR005172	CRC domain
Pfam	PF03638	3.7E-10	175	210	IPR005172	CRC domain
SMART	SM01114	0.44	242	267	IPR033467	Tesmin/TSO1-like CXC domain

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MKMDPVAGGG CGSDSRRWCV SFTCSGANMN AWSSILKRVF AETKSNLKDL CLLRVIHFEE 60 VDEFGRVMEQ SESSGVVTTE PDFPRRKLDF AVMCRATATA ILPEHPQARL QSKLLALAQS 120 QAPPPPFPPQ SPPPQPSPKQ PVRPVKPQPQ PIMPQSPKSR QRSDSEVKEG TPKKQKSCNC 180 RYSQCLKLYC ECFSRRIYCD GCNCTNCHNN VEHDATRQEA VGATLERNPN AFKLKILNSP 240 HGLQDGKANI LCSENCKCMD CKNFEGSEER TALVHVDRDN YISYLQQPAN AAINEAIGTS 300 HLGALPASKM GSSFSAQWLV INLLGWHNFH RSPLADVLRS HDVKDLCSLL VIVSAEATKA 360 LADKNGKIDK QVGDQLKSSI VSSAPDKYCQ MEDNMQKSIP EDRLSVNQVV KADDSGSDES 420 DAQTRRPLSP ATLALMCDEH DVMLVEPGSP TAAANSNGTA TCKSSQGQIV TKLYAEQERI 480 VLTKFWDFLN QTVTCGSIKE FLFLKHQEIA TWQVIIGPSH KNKPPQLTVP EPPLSSIWRD 540 ENGIYGPCHS LPRQYSYHWR RQ*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MKMDPVAGGG CGSDSRRWCV SFTCSGANMN AWSSILKRVF AETKSNLKDL CLLRVIHFEE  60
VDEFGRVMEQ SESSGVVTTE PDFPRRKLDF AVMCRATATA ILPEHPQARL QSKLLALAQS  120
QAPPPPFPPQ SPPPQPSPKQ PVRPVKPQPQ PIMPQSPKSR QRSDSEVKEG TPKKQKSCNC  180
RYSQCLKLYC ECFSRRIYCD GCNCTNCHNN VEHDATRQEA VGATLERNPN AFKLKILNSP  240
HGLQDGKANI LCSENCKCMD CKNFEGSEER TALVHVDRDN YISYLQQPAN AAINEAIGTS  300
HLGALPASKM GSSFSAQWLV INLLGWHNFH RSPLADVLRS HDVKDLCSLL VIVSAEATKA  360
LADKNGKIDK QVGDQLKSSI VSSAPDKYCQ MEDNMQKSIP EDRLSVNQVV KADDSGSDES  420
DAQTRRPLSP ATLALMCDEH DVMLVEPGSP TAAANSNGTA TCKSSQGQIV TKLYAEQERI  480
VLTKFWDFLN QTVTCGSIKE FLFLKHQEIA TWQVIIGPSH KNKPPQLTVP EPPLSSIWRD  540
ENGIYGPCHS LPRQYSYHWR RQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-15	166	276	2	133	Protein lin-54 homolog
5fd3_B	2e-15	166	276	2	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115699.1	1e-173	protein tesmin/TSO1-like CXC 5 isoform X1
Refseq	XP_028115700.1	1e-173	protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBL	A0A2R6PHA4	0.0	A0A2R6PHA4_ACTCH; Protein tesmin/TSO1-like
STRING	VIT_04s0008g03670.t01	1e-114	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	3e-95	Tesmin/TSO1-like CXC domain-containing protein