PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn360421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 728aa MW: 82918.8 Da PI: 6.3249

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn360421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	220.2	1e-67	187	515	2	332
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlta 98 ++Ll++A+ v +++ a++lL + + +as+ g+p+qR++ y++eAL++r+ r++ ++ ++ + ++ + + + + + ++ P++ + + Achn360421 187 AQVLLSAADKVGYQQFDSASRLLLHCESMASEVGNPVQRIVYYYAEALRERIDRETGNIKAKRAEERGIHGKcmVLGPSEEFLAHHQKIPFILAIQCAG 285 689*************************************************5555543333222222223322222333448999******* PP GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 q I e+v + +vH iD++i +G++W L+qaLa+ ++ p ++iT+vg ++k+e+e t erL +fA++l++pf+f+v+ ++++d++ e++ Achn360421 286 MQKIIESVVSVsaPKVHLIDLQIRNGTHWTILMQALAENNKCPIkLMKITTVGT---TNKHEMEGTCERLVSFAKSLNLPFSFKVVFLSDMKDFKKEQI 381 ***9877669*******************9986655388***...5799********************************** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +++p+E ++V + l ++ +++ +les v++++++l+P ++vv e ea++ns+sF++rf+eal +sa fd+le + r+++ r+++E +++ Achn360421 382 DTEPDEIVVVYSPTVLRSMISRPECLES----VMRVIQRLKPALMVVNEIEANYNSPSFVKRFVEALFSHSAHFDCLEDCMQRDDKYRMVLEGTYFRDG 476 ****************99999999....*************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 i n+va++ +er+er + + Wr+ + ++G+ ++ ls + Achn360421 477 ILNIVAAKDEERIERSVRIGVWRAFFARFGMMEIGLSMS 515 ******************************9998864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.704	160	537	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-65	187	515	IPR005202	Transcription factor GRAS
Pfam	PF12776	9.5E-6	527	626	IPR024752	Myb/SANT-like domain

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MMENAFFSST LVNFNEIQGV YSALKELEIE EVEEERSFDM EGWKEIGFSH SHYAFHQEKM 60 GDEMVHCSDY GVPNNFPFSG IPFPEVIDQF TIGKPKRHQF SRAPFELLSN YGSSPNRARD 120 GNVSSLTNQA CVDDRKLSTE EIIRMAGERY IQFSTQNFGG FSTFMHPYGC GLLGLSTDET 180 TKDIELAQVL LSAADKVGYQ QFDSASRLLL HCESMASEVG NPVQRIVYYY AEALRERIDR 240 ETGNIKAKRA EERGIHGKCM VLGPSEEFLA HHQKIPFILA IQCAGMQKII ESVVSVSAPK 300 VHLIDLQIRN GTHWTILMQA LAENNKCPIK LMKITTVGTT NKHEMEGTCE RLVSFAKSLN 360 LPFSFKVVFL SDMKDFKKEQ IDTEPDEIVV VYSPTVLRSM ISRPECLESV MRVIQRLKPA 420 LMVVNEIEAN YNSPSFVKRF VEALFSHSAH FDCLEDCMQR DDKYRMVLEG TYFRDGILNI 480 VAAKDEERIE RSVRIGVWRA FFARFGMMEI GLSMSKRVAK SSPRRFWTKR KEEFLMGCMK 540 ELFNQDTKWK LDCGQFKGGF YGECEKKIIC AFPGTDLRAI PHIESKIKMW RKQYNLLQDM 600 LKTSGFGWDD VEKIILVDSD DVWDNYVKRE KDVKGMRNKS FPYYEDWLVL FGKDRATRDL 660 VEGPADYVAA IETEEANKEQ GPESPVLQFS VADMESMLAN CGTSSKCPSS SNANSKKKGR 720 VSEGISK*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MMENAFFSST LVNFNEIQGV YSALKELEIE EVEEERSFDM EGWKEIGFSH SHYAFHQEKM  60
GDEMVHCSDY GVPNNFPFSG IPFPEVIDQF TIGKPKRHQF SRAPFELLSN YGSSPNRARD  120
GNVSSLTNQA CVDDRKLSTE EIIRMAGERY IQFSTQNFGG FSTFMHPYGC GLLGLSTDET  180
TKDIELAQVL LSAADKVGYQ QFDSASRLLL HCESMASEVG NPVQRIVYYY AEALRERIDR  240
ETGNIKAKRA EERGIHGKCM VLGPSEEFLA HHQKIPFILA IQCAGMQKII ESVVSVSAPK  300
VHLIDLQIRN GTHWTILMQA LAENNKCPIK LMKITTVGTT NKHEMEGTCE RLVSFAKSLN  360
LPFSFKVVFL SDMKDFKKEQ IDTEPDEIVV VYSPTVLRSM ISRPECLESV MRVIQRLKPA  420
LMVVNEIEAN YNSPSFVKRF VEALFSHSAH FDCLEDCMQR DDKYRMVLEG TYFRDGILNI  480
VAAKDEERIE RSVRIGVWRA FFARFGMMEI GLSMSKRVAK SSPRRFWTKR KEEFLMGCMK  540
ELFNQDTKWK LDCGQFKGGF YGECEKKIIC AFPGTDLRAI PHIESKIKMW RKQYNLLQDM  600
LKTSGFGWDD VEKIILVDSD DVWDNYVKRE KDVKGMRNKS FPYYEDWLVL FGKDRATRDL  660
VEGPADYVAA IETEEANKEQ GPESPVLQFS VADMESMLAN CGTSSKCPSS SNANSKKKGR  720
VSEGISK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-24	209	517	26	333	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064972.1	1e-156	DELLA protein RGL1-like
TrEMBL	A0A2R6P5N7	0.0	A0A2R6P5N7_ACTCH; DELLA protein
STRING	XP_008235214.1	1e-144	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	1e-37	SCARECROW-like 13