PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn358581
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 404aa    MW: 46351.1 Da    PI: 7.0356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn358581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14153200148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W+++Ed++l +++ ++G g+W++++   g+ R +k+c++rw +yl
       Achn358581 153 KGLWSPDEDQRLRNYILRHGHGRWTSVPVNAGLQRNGKSCRLRWINYL 200
                      678*******************************************97 PP

2Myb_DNA-binding46.96.3e-15206251148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+e  + ++ +lG++ W+ Ia++++ gRt++++k++w+++l
       Achn358581 206 RGMFTSQEEETVLTLHVMLGNK-WSQIAHHFP-GRTDNEIKNYWHSHL 251
                      789*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138691.1E-143186IPR016706Cleavage/polyadenylation specificity factor subunit 5
PfamPF138696.1E-1287134IPR016706Cleavage/polyadenylation specificity factor subunit 5
PROSITE profilePS5129414.977148200IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-20148203IPR009057Homeodomain-like
SuperFamilySSF466896.97E-28151247IPR009057Homeodomain-like
SMARTSM007178.8E-10152202IPR001005SANT/Myb domain
PfamPF002498.3E-13153200IPR001005SANT/Myb domain
CDDcd001673.50E-8156200No hitNo description
PROSITE profilePS5129424.03201255IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-24204255IPR009057Homeodomain-like
SMARTSM007173.6E-13205253IPR001005SANT/Myb domain
PfamPF002493.1E-13206251IPR001005SANT/Myb domain
CDDcd001672.96E-9209251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006378Biological ProcessmRNA polyadenylation
GO:0005849Cellular ComponentmRNA cleavage factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MKEMGMMELI NDDRGDSLIG DNTRDQHYDR MVQEHNHPHI LLLQIGNTFC KLPGGRLKPG  60
ENEIEGLKRK LNSKLGANSP TLQPDWQECK KLYVVHLSER EYFAVPKNLK LLAVPLFELY  120
DNVQSSSSLT ISCLSGKMRC NKPVEKPKHK HHKGLWSPDE DQRLRNYILR HGHGRWTSVP  180
VNAGLQRNGK SCRLRWINYL RPGLKRGMFT SQEEETVLTL HVMLGNKWSQ IAHHFPGRTD  240
NEIKNYWHSH LKKKVAKTDQ TENTQSSLSS PNPSSIESFE HIEASSMNTN PESGHSHLPK  300
LLFAEWFSLD QFLGQDTRNR DSSVPGFVPS TQTFPKDPEF QDSCLESLLN ESSVSNGSVS  360
DHELFHIPDL KTEDWFQDHG FGNFVTQEDM YSHFHFNSDA MYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2j8q_B3e-243113385215CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 5
3bho_A3e-243113366196Cleavage and polyadenylation specificity factor subunit 5
3p5t_A3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p5t_B3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p5t_C3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p5t_D3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p5t_E3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p5t_F3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_A3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_B3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_E3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_F3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_I3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_J3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_M3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3p6y_N3e-243113352182Cleavage and polyadenylation specificity factor subunit 5
3q2s_A3e-243113365195Cleavage and polyadenylation specificity factor subunit 5
3q2s_B3e-243113365195Cleavage and polyadenylation specificity factor subunit 5
3q2t_A3e-243113365195Cleavage and polyadenylation specificity factor subunit 5
3q2t_B3e-243113365195Cleavage and polyadenylation specificity factor subunit 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061091.18e-92transcription factor LAF1-like
TrEMBLA0A2R6PN010.0A0A2R6PN01_ACTCH; Transcription factor like
STRINGPGSC0003DMT4000370802e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-54myb domain protein 18