PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn358341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HSF

Protein Properties

Length: 897aa MW: 100587 Da PI: 6.7444

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn358341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	70.5	3.3e-22	632	716	3	103
HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXX CS HSF_DNA-bind 3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikr 99 ++++y++++d++++ +isw + +nsf+v+d+ +f++++Lp yFkh+nf+SF gF+kv+ ++ weF++++F +g+k+ll++i r Achn358341 632 VRETYQMVSDSATDLIISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSF-------GFRKVDPDK---------WEFANEWFLRGQKHLLKNIVR 712 789*********************************************9.......9*999.........******************* PP XXXX CS HSF_DNA-bind 100 kkse 103 kk++ Achn358341 713 KKHS 716 *976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.850.10	2.0E-90	167	482	IPR001752	Kinesin motor domain
SuperFamily	SSF52540	2.66E-88	169	483	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00129	2.0E-90	169	489	IPR001752	Kinesin motor domain
PROSITE profile	PS50067	73.269	171	483	IPR001752	Kinesin motor domain
CDD	cd01367	8.11E-153	171	481	No hit	No description
Pfam	PF00225	2.6E-79	177	482	IPR001752	Kinesin motor domain
PRINTS	PR00380	3.8E-21	240	261	IPR001752	Kinesin motor domain
PRINTS	PR00380	3.8E-21	349	366	IPR001752	Kinesin motor domain
PROSITE pattern	PS00411	0	382	393	IPR019821	Kinesin motor domain, conserved site
PRINTS	PR00380	3.8E-21	383	401	IPR001752	Kinesin motor domain
PRINTS	PR00380	3.8E-21	433	454	IPR001752	Kinesin motor domain
Gene3D	G3DSA:1.10.10.10	3.6E-23	631	713	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.5E-7	631	654	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.71E-21	632	713	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-32	632	713	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.2E-17	633	713	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-7	669	681	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007018	Biological Process	microtubule-based movement
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0008017	Molecular Function	microtubule binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MNAVGRQMQR SGSTGHHHQR HYSSDNFLDP SFNTTTTNNK WLQSAALQDF GFFGNNGGVQ 60 GSRMSRNAQR GDYGGDEVST PPLCSRSSSM RKNGGDERVS PIVIVYNILY MQVPDLYNGS 120 SLSHIVRGTS FDDSEPYITT NKMETGARGV PENNLLRSFS ADKEKASNVA KIKVVVRKRP 180 LNKKEIAKKE EDIVTIARNT NSLNVHETKL KVDLTEYVEK HDFFFDAVLS EDVSNDESVT 240 DKRDLVNEFV SGSGKTYTMQ PLPLKASQDI FRLMNHTYRN QGFQLFVSFF EIYRGKVFDL 300 LNDRKKLCMR EDGKQQVCIV GLQEYRVSNV DTVKELIERG NASRSTGTTG ANEESSRSHA 360 ILQLAIKRPV DGNDSKPARL VGKLSFIDLA GSERGADTTD NDKQTRMEGA EINKSLLALK 420 ECIRALDNDQ GHIPFRGSKL TEVLRDSFVG DSRTVMISCI SPNSGSCEHT LNTLRYADRV 480 KSLSKGNSSK RDHISSSSNL RSSIALPLSS VSPTLTDVPD ETNRFGWSKQ IERDSSSSLN 540 VERVPSGRAQ SNLPSSVFSD TYRGRRGGSD IIEDDFDYSE TTYEQDKPSS MMNKTVEKYQ 600 SHADDDLNAL SKEEEDLVGA HRRQVEETME IVRETYQMVS DSATDLIISW GKANNSFIVV 660 DPLDFSQRIL PAYFKHNNFS SFGFRKVDPD KWEFANEWFL RGQKHLLKNI VRKKHSRSPY 720 WHKYEEEDDK EILTEIARLR QEQEVLEQEL EGMNKRLEAT EKRPQQMMDF LHKVVEDPEI 780 LPRMIQERER TKRLTSEKKR RLMMSSSSSS SGGVMSEEGE ESTTPRVFPS IRSPNLPDTR 840 PAAAVWLTPD SAAAAGGFMA APPRNGGGDM GYFGGMGSGV EQSPPPYPFS LLGGGF*

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MNAVGRQMQR SGSTGHHHQR HYSSDNFLDP SFNTTTTNNK WLQSAALQDF GFFGNNGGVQ  60
GSRMSRNAQR GDYGGDEVST PPLCSRSSSM RKNGGDERVS PIVIVYNILY MQVPDLYNGS  120
SLSHIVRGTS FDDSEPYITT NKMETGARGV PENNLLRSFS ADKEKASNVA KIKVVVRKRP  180
LNKKEIAKKE EDIVTIARNT NSLNVHETKL KVDLTEYVEK HDFFFDAVLS EDVSNDESVT  240
DKRDLVNEFV SGSGKTYTMQ PLPLKASQDI FRLMNHTYRN QGFQLFVSFF EIYRGKVFDL  300
LNDRKKLCMR EDGKQQVCIV GLQEYRVSNV DTVKELIERG NASRSTGTTG ANEESSRSHA  360
ILQLAIKRPV DGNDSKPARL VGKLSFIDLA GSERGADTTD NDKQTRMEGA EINKSLLALK  420
ECIRALDNDQ GHIPFRGSKL TEVLRDSFVG DSRTVMISCI SPNSGSCEHT LNTLRYADRV  480
KSLSKGNSSK RDHISSSSNL RSSIALPLSS VSPTLTDVPD ETNRFGWSKQ IERDSSSSLN  540
VERVPSGRAQ SNLPSSVFSD TYRGRRGGSD IIEDDFDYSE TTYEQDKPSS MMNKTVEKYQ  600
SHADDDLNAL SKEEEDLVGA HRRQVEETME IVRETYQMVS DSATDLIISW GKANNSFIVV  660
DPLDFSQRIL PAYFKHNNFS SFGFRKVDPD KWEFANEWFL RGQKHLLKNI VRKKHSRSPY  720
WHKYEEEDDK EILTEIARLR QEQEVLEQEL EGMNKRLEAT EKRPQQMMDF LHKVVEDPEI  780
LPRMIQERER TKRLTSEKKR RLMMSSSSSS SGGVMSEEGE ESTTPRVFPS IRSPNLPDTR  840
PAAAVWLTPD SAAAAGGFMA APPRNGGGDM GYFGGMGSGV EQSPPPYPFS LLGGGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2heh_A	1e-99	171	484	52	383	KIF2C protein
3edl_D	1e-99	172	484	1	331	Kinesin13 Motor domain
4ubf_A	1e-99	171	484	52	383	Kinesin-like protein KIF2C
4ubf_B	1e-99	171	484	52	383	Kinesin-like protein KIF2C
4ubf_C	1e-99	171	484	52	383	Kinesin-like protein KIF2C
4ubf_D	1e-99	171	484	52	383	Kinesin-like protein KIF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts redundantly with KIN13A to modulate cell wall synthesis and cell expansion via the THE1 pathway. {ECO:0000269\|PubMed:25232944}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249745.1	0.0	PREDICTED: kinesin-like protein KIN-13B
Swissprot	Q940Y8	0.0	KN13B_ARATH; Kinesin-like protein KIN-13B
TrEMBL	A0A2R6QV20	0.0	A0A2R6QV20_ACTCH; Kinesin-like protein
STRING	XP_010249745.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	4e-65	heat shock transcription factor C1

Publications ? help Back to Top
Reddy AS,Day IS Kinesins in the Arabidopsis genome: a comparative analysis among eukaryotes. BMC Genomics, 2001. 2: p. 2 [PMID:11472632] Lee YR,Liu B Cytoskeletal motors in Arabidopsis. Sixty-one kinesins and seventeen myosins. Plant Physiol., 2004. 136(4): p. 3877-83 [PMID:15591445] Richardson DN,Simmons MP,Reddy AS Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes. BMC Genomics, 2006. 7: p. 18 [PMID:16448571] Vanstraelen M,Inzé D,Geelen D Mitosis-specific kinesins in Arabidopsis. Trends Plant Sci., 2006. 11(4): p. 167-75 [PMID:16530461] Niwa Y, et al. Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli. Plant Cell Physiol., 2006. 47(3): p. 319-31 [PMID:16597626] Zhu C,Dixit R Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins. Protoplasma, 2012. 249(4): p. 887-99 [PMID:22038119] Fujikura U, et al. Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway. PLoS Genet., 2014. 10(9): p. e1004627 [PMID:25232944]