PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn356611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 653aa    MW: 71454.2 Da    PI: 4.7498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn356611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-1102866523374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++Ll+cA+  ++ +  +a   L rl+el s++gdpm+R+a+ fteAL +r+ +      ++ ++ + se++s+e +  +k++++++P+ kf+hltaNqa
  Achn356611 286 KALLDCAKL-AELEPDKAMISLVRLRELLSEHGDPMERVAFQFTEALFSRIKH------QTENTPTVSENTSEELTLLYKVLNDACPYSKFAHLTANQA 377
                 789****95.55688999999*******************************9......44445555556699999*********************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea+++++++Hi+Df+i qG+QW+aLlqaLa+Rp+g+p  +Ri g+ +p+ g   + +l +tg+rL++fA+ lg++fef++ v + ++dl+ +++rv+
  Achn356611 378 ILEATQRAKKIHIVDFGIVQGIQWAALLQALATRPAGKPeFIRISGIPAPALGksPSSALFATGNRLRDFAKLLGLNFEFEP-VLTPIQDLNGSSFRVD 475
                 ***********************************7766599*******999988999************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E+laVn++lql++llde+    +   + L l ksl+P +v++ e ea +n+ +Fl rf++al+yysa+f+sle ++ r+s er+ vEr l+gr+i  
  Achn356611 476 PDEVLAVNFMLQLYNLLDETNLGVE---TALGLAKSLNPSIVTLGEYEAGLNRVDFLCRFSNALDYYSAVFESLEPNMTRNSPERTQVERLLFGRRIAG 571
                 *****************77766666...9********************************************************************** PP

        GRAS 297 vvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 v+a  g    rer+e + +Wr  +e+aGF++vpls++a++qa+ ll +++ s  +++ +++  ++ l W++ pL++vSaWr
  Achn356611 572 VIAPDGPGtGRERMEDKDQWRLLMENAGFESVPLSHYATSQADILLWNYNySSLFSLMKSEPGFLsLSWNKVPLLTVSAWR 652
                 *****997689***************************************9999***999888877**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.228258630IPR005202Transcription factor GRAS
PfamPF035143.9E-108286652IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MTTKFVTHVA TDSTFIVATY ESSSDALPTM IQQSIFTKIL ETNQSHRSKN PTVHIGFASP  60
QTITDHDVMY IDAPYIDASG NLMAIAQQVI KQKQQQEQQQ QQQQQQIGAS PFSLSPWSTT  120
HQSLSSSPTL GYGFPDPFQV AGGTADGGEP GFHFPNLEHQ SSAFRFADFG GGSGGEFDSD  180
EWMESLMGGG DSTESSNLAS SWHSSADFGL YNSDPFSACP SRLIIASSPP SDLSRVIFSD  240
SLKNSNLLQA SSPPWAATSP SPVKNDVVSG TITTSPEADS SKPLFKALLD CAKLAELEPD  300
KAMISLVRLR ELLSEHGDPM ERVAFQFTEA LFSRIKHQTE NTPTVSENTS EELTLLYKVL  360
NDACPYSKFA HLTANQAILE ATQRAKKIHI VDFGIVQGIQ WAALLQALAT RPAGKPEFIR  420
ISGIPAPALG KSPSSALFAT GNRLRDFAKL LGLNFEFEPV LTPIQDLNGS SFRVDPDEVL  480
AVNFMLQLYN LLDETNLGVE TALGLAKSLN PSIVTLGEYE AGLNRVDFLC RFSNALDYYS  540
AVFESLEPNM TRNSPERTQV ERLLFGRRIA GVIAPDGPGT GRERMEDKDQ WRLLMENAGF  600
ESVPLSHYAT SQADILLWNY NYSSLFSLMK SEPGFLSLSW NKVPLLTVSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1492816521375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072744.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2R6RLD50.0A0A2R6RLD5_ACTCH; Scarecrow-like protein
STRINGEOX911130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein