PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 682aa    MW: 73692.6 Da    PI: 6.4462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.32.7e-1033336802374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +++L+++Ae +++g+   a+ +Larl+++ sp g+p++R+a++f+eAL+  l+       ++l++s+ +    + ++ a+k fse+sP+l+f+++t+Nq
  Achn354861 333 IDQLFKVAELIQTGNSVHAHGILARLNHQLSPIGKPFHRAAFFFKEALQVILHP------ASLHSSPFN---LILKIGAYKSFSEISPLLQFANFTCNQ 422
                 689**************************************************9......778888887...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 a+le v+g +r+Hi+Dfdi++G+QW++L+q+La R++g+  l+iT+++sp+++++ el  t+e+L +fA+e++vpfef+++        +l++L ++++
  Achn354861 423 ALLEIVDGFDRIHIVDFDIGYGGQWASLMQELALRSGGALALKITAFASPSTHDQLELGLTRENLMHFAAEINVPFEFEIV-----GLDSLHSLPLHEN 516
                 ********************************************************************************7.....4445599999*** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aVnl +  ++ +  +++l+     +L++vk+lsPk+vv v++ +d+n+ +F +++++al+ y+ l++sl+a    + e+ +k+Er+l+++ i+++v
  Achn354861 517 EAVAVNLPVGSFSNH--QLPLPL----ILRFVKQLSPKIVVSVDRGCDRNDLPFPNHVIHALQSYTNLLESLDAV-NVNLEALQKIERFLIQPGIEKIV 608
                 ********9666554..566665....*********************************************665.4566999**************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + + ++     e+  +Wr  + ++GF+p+++s++a++qa++++++++++g+++e+++ slvl+W++++L+s+SaWr
  Achn354861 609 MSRYRS----PEKTPHWRTLFLSSGFSPLTFSNFAESQADCVVKRTPVRGFHIEKRQSSLVLCWQRKELISASAWR 680
                 **9999....9****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.301306660IPR005202Transcription factor GRAS
PfamPF035149.4E-101333680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MVGPSPPTST LSSSLGGGGG GSGSADTAGV AAVSGNSNVG VESGCGSSEL RQVPPPPPEV  60
GCGSAAAGAE KCGLGMEDWE SILSDSAAAS PGQEQSVLCW IMGDVEDPSM GLNRLLQSGG  120
GGGPAAAEFE FHGGFGGGGV DQGFGFDPVA SGGGNLMGPI NSSLPIPGFS HTSNKFFHEK  180
LNFAPNPSNP QNYKLPNPPN PMFSPLSNNF LPISLSQAAF NHPQPPLESP ETKPHIFNPL  240
MLINNHQAQP PQNPAFFLPF PYPQQDPHLI LPPPAKRQNT GGLEPIQKGQ FSDSMLQHQH  300
QQDNLSHHLH LLPYLQQRPK MVGDEMGQNQ GVIDQLFKVA ELIQTGNSVH AHGILARLNH  360
QLSPIGKPFH RAAFFFKEAL QVILHPASLH SSPFNLILKI GAYKSFSEIS PLLQFANFTC  420
NQALLEIVDG FDRIHIVDFD IGYGGQWASL MQELALRSGG ALALKITAFA SPSTHDQLEL  480
GLTRENLMHF AAEINVPFEF EIVGLDSLHS LPLHENEAVA VNLPVGSFSN HQLPLPLILR  540
FVKQLSPKIV VSVDRGCDRN DLPFPNHVIH ALQSYTNLLE SLDAVNVNLE ALQKIERFLI  600
QPGIEKIVMS RYRSPEKTPH WRTLFLSSGF SPLTFSNFAE SQADCVVKRT PVRGFHIEKR  660
QSSLVLCWQR KELISASAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3335168022375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112831.10.0scarecrow-like protein 6
SwissprotO813161e-146SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2R6R9A90.0A0A2R6R9A9_ACTCH; Scarecrow-like protein
STRINGVIT_15s0048g00270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-148GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]