PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn354861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 682aa MW: 73692.6 Da PI: 6.4462 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337.3 | 2.7e-103 | 333 | 680 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+++Ae +++g+ a+ +Larl+++ sp g+p++R+a++f+eAL+ l+ ++l++s+ + + ++ a+k fse+sP+l+f+++t+Nq Achn354861 333 IDQLFKVAELIQTGNSVHAHGILARLNHQLSPIGKPFHRAAFFFKEALQVILHP------ASLHSSPFN---LILKIGAYKSFSEISPLLQFANFTCNQ 422 689**************************************************9......778888887...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 a+le v+g +r+Hi+Dfdi++G+QW++L+q+La R++g+ l+iT+++sp+++++ el t+e+L +fA+e++vpfef+++ +l++L ++++ Achn354861 423 ALLEIVDGFDRIHIVDFDIGYGGQWASLMQELALRSGGALALKITAFASPSTHDQLELGLTRENLMHFAAEINVPFEFEIV-----GLDSLHSLPLHEN 516 ********************************************************************************7.....4445599999*** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 Ea+aVnl + ++ + +++l+ +L++vk+lsPk+vv v++ +d+n+ +F +++++al+ y+ l++sl+a + e+ +k+Er+l+++ i+++v Achn354861 517 EAVAVNLPVGSFSNH--QLPLPL----ILRFVKQLSPKIVVSVDRGCDRNDLPFPNHVIHALQSYTNLLESLDAV-NVNLEALQKIERFLIQPGIEKIV 608 ********9666554..566665....*********************************************665.4566999**************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++ e+ +Wr + ++GF+p+++s++a++qa++++++++++g+++e+++ slvl+W++++L+s+SaWr Achn354861 609 MSRYRS----PEKTPHWRTLFLSSGFSPLTFSNFAESQADCVVKRTPVRGFHIEKRQSSLVLCWQRKELISASAWR 680 **9999....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.301 | 306 | 660 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-101 | 333 | 680 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MVGPSPPTST LSSSLGGGGG GSGSADTAGV AAVSGNSNVG VESGCGSSEL RQVPPPPPEV 60 GCGSAAAGAE KCGLGMEDWE SILSDSAAAS PGQEQSVLCW IMGDVEDPSM GLNRLLQSGG 120 GGGPAAAEFE FHGGFGGGGV DQGFGFDPVA SGGGNLMGPI NSSLPIPGFS HTSNKFFHEK 180 LNFAPNPSNP QNYKLPNPPN PMFSPLSNNF LPISLSQAAF NHPQPPLESP ETKPHIFNPL 240 MLINNHQAQP PQNPAFFLPF PYPQQDPHLI LPPPAKRQNT GGLEPIQKGQ FSDSMLQHQH 300 QQDNLSHHLH LLPYLQQRPK MVGDEMGQNQ GVIDQLFKVA ELIQTGNSVH AHGILARLNH 360 QLSPIGKPFH RAAFFFKEAL QVILHPASLH SSPFNLILKI GAYKSFSEIS PLLQFANFTC 420 NQALLEIVDG FDRIHIVDFD IGYGGQWASL MQELALRSGG ALALKITAFA SPSTHDQLEL 480 GLTRENLMHF AAEINVPFEF EIVGLDSLHS LPLHENEAVA VNLPVGSFSN HQLPLPLILR 540 FVKQLSPKIV VSVDRGCDRN DLPFPNHVIH ALQSYTNLLE SLDAVNVNLE ALQKIERFLI 600 QPGIEKIVMS RYRSPEKTPH WRTLFLSSGF SPLTFSNFAE SQADCVVKRT PVRGFHIEKR 660 QSSLVLCWQR KELISASAWR C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-33 | 351 | 680 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028112831.1 | 0.0 | scarecrow-like protein 6 | ||||
Swissprot | O81316 | 1e-146 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2R6R9A9 | 0.0 | A0A2R6R9A9_ACTCH; Scarecrow-like protein | ||||
STRING | VIT_15s0048g00270.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-148 | GRAS family protein |
Publications ? help Back to Top | |||
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