PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn354791

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 459aa MW: 50646.1 Da PI: 6.5595

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn354791	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.7e-15	242	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Achn354791 242 SQYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 293 78**************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.82E-26	242	303	No hit	No description
Pfam	PF00847	9.3E-10	242	293	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-18	242	303	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.137	243	301	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-34	243	307	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-18	243	301	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MEVHQEPHHQ AHHTPSSSVS ISNPIPTSFF HSQPHFSYNG VFNGGEGENG GFYSPLTVMP 60 LKSDGSLCIM EALNRSQQQG MGTNSTPKLE DFFGGAHHYE ASSDREAMAL SLDNSIFYNQ 120 NPNHQSFQTV DYSGFRAHEM YQTMGEEEIT AMKNWVSRNY PSNNGLDQKL MCSVGENGLG 180 YENWQSLSLS MSPGSQSSCV TGSQQVSAIV SECVAKKRGS EKLEQKQIVH RKSIDTFGQR 240 TSQYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF 300 DISRYDVERI MASNTLLAGE LARRNKEIEA NKEVPNIGHS KQDNRSETNW KMTLDQASES 360 DPRPNPSFPM TVGLVQQEVN DSGKMAYHVS NASSLVTSLG SSREGSPDKQ NSLPMPFAMP 420 SKIFTDSTTN VGSWISSAQI RPPMPMPNVP VFAAWTDA*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MEVHQEPHHQ AHHTPSSSVS ISNPIPTSFF HSQPHFSYNG VFNGGEGENG GFYSPLTVMP  60
LKSDGSLCIM EALNRSQQQG MGTNSTPKLE DFFGGAHHYE ASSDREAMAL SLDNSIFYNQ  120
NPNHQSFQTV DYSGFRAHEM YQTMGEEEIT AMKNWVSRNY PSNNGLDQKL MCSVGENGLG  180
YENWQSLSLS MSPGSQSSCV TGSQQVSAIV SECVAKKRGS EKLEQKQIVH RKSIDTFGQR  240
TSQYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF  300
DISRYDVERI MASNTLLAGE LARRNKEIEA NKEVPNIGHS KQDNRSETNW KMTLDQASES  360
DPRPNPSFPM TVGLVQQEVN DSGKMAYHVS NASSLVTSLG SSREGSPDKQ NSLPMPFAMP  420
SKIFTDSTTN VGSWISSAQI RPPMPMPNVP VFAAWTDA*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579963.1	1e-127	AP2-like ethylene-responsive transcription factor ANT isoform X5
Swissprot	Q84Z02	5e-60	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A2R6R5B6	1e-176	A0A2R6R5B6_ACTCH; AP2-like ethylene-responsive transcription factor ANT
STRING	VIT_07s0151g00440.t01	1e-101	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17490	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	6e-44	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]