PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn354091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17484.2 Da PI: 8.015 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.3e-31 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCda+vavi+fs++g+lye+ss Achn354091 2 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSS 52 79***********************************************96 PP | |||||||
2 | K-box | 33.8 | 1.4e-12 | 109 | 143 | 35 | 69 |
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 +R++lG+dL+s+s++eL ++ +qLe+sl++iR++K Achn354091 109 LRKILGQDLGSCSVEELLEIDSQLERSLRNIRARK 143 79********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 1.61E-39 | 1 | 65 | No hit | No description |
SMART | SM00432 | 2.1E-32 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.931 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-32 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-28 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-18 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-18 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.573 | 75 | 151 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.6E-10 | 109 | 143 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKRIENPTSR QVTFSKRRNG LLKKAYELSV LCDAQVAVIV FSQNGRLYEF SSSNMQKMID 60 RYSKYADVKI NSPEIEQYEE LLLLFPNLFL SLNNNLVQVL FPNFVSGCLR KILGQDLGSC 120 SVEELLEIDS QLERSLRNIR ARKVLEFLIE D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-18 | 3 | 67 | 10 | 74 | MEF2 CHIMERA |
6bz1_B | 3e-18 | 3 | 67 | 10 | 74 | MEF2 CHIMERA |
6bz1_C | 3e-18 | 3 | 67 | 10 | 74 | MEF2 CHIMERA |
6bz1_D | 3e-18 | 3 | 67 | 10 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00576 | DAP | Transfer from AT5G62165 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP407154 | 1e-131 | KP407154.1 Actinidia chinensis SOC1h (SOC1h) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022774331.1 | 1e-55 | MADS-box protein AGL42-like | ||||
Swissprot | Q9FIS1 | 1e-45 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A2R6RSY8 | 2e-71 | A0A2R6RSY8_ACTCH; MADS-box protein | ||||
STRING | EOY23041 | 1e-51 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 4e-46 | AGAMOUS-like 42 |