PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn353731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 662aa    MW: 73732.6 Da    PI: 5.9728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn353731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.42.1e-1332966601374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lLl+cAeav+++d  l +++L +l+ +++p gd+mqR+a++fteAL++rla s ++  +    +p +  + ns e l++++++++++P++kf+h+t
  Achn353731 296 LVHLLLACAEAVAKEDYMLGRKYLHHLNRMVTPLGDSMQRVASCFTEALSSRLAASLTTKPSPSisKPFTPFPPNSLEILKIYQILYQACPYIKFAHFT 394
                 68***************************************************99543322222123333334459*********************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef+  v ++l+dl++++++ 
  Achn353731 395 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SLEAVRETGRCLTELAHSLHIPFEFHS-VGEQLKDLNPRMFNR 488
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn++ +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+
  Achn353731 489 RVGEALAVNSINRLHRVP------GNYLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPEDSAQRAKVEQYIFAPEIR 581
                 *****************9......444557********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg+er++rhe+lekWr+ +e  GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Achn353731 582 NVVACEGTERVMRHERLEKWRRLMEGKGFKEVALSGNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 660
                 ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.435270640IPR005202Transcription factor GRAS
PfamPF035147.4E-131296660IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MRSLKRENSC TKLHPTSPND SVTDSKKTPP SSDVNHNSLT PRSFGLPALK DEVLDGDIEG  60
QSPDSTMWES FFSDQLDGDF MISSPVRNIP SPQASNMNYN YSYVHSMHGQ GLLGGSPPRM  120
SSPLGAYGSV QKGKGLSPLH RVFNSPNNHY MQPEDINGLY LQALETFLDD YEKEDDDMLA  180
FAPMFNSEGV GSSSECLDAV AVVPALLDCL TMQNSLRFCR PVNESLVTVG SQLNQDTESY  240
QIVSGVTARF SKQLHQERQQ EKLLLQPPSP LQHPPHNTFL VPPPEPDQEQ DSGLQLVHLL  300
LACAEAVAKE DYMLGRKYLH HLNRMVTPLG DSMQRVASCF TEALSSRLAA SLTTKPSPSI  360
SKPFTPFPPN SLEILKIYQI LYQACPYIKF AHFTANQAIF EAFEAEERVH VIDLDILQGY  420
QWPAFMQALA ARPSGAPFLR ITGVGPSLEA VRETGRCLTE LAHSLHIPFE FHSVGEQLKD  480
LNPRMFNRRV GEALAVNSIN RLHRVPGNYL GNLLAMIRDQ APNIVTIVEQ EASHNGPYFL  540
GRFLEALHYY SAIFDSLDAT FPEDSAQRAK VEQYIFAPEI RNVVACEGTE RVMRHERLEK  600
WRRLMEGKGF KEVALSGNAV TQSKILLGLY SCDGYRLTED KGCLLLGWQD RAILAASAWR  660
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-9830365925377Protein SCARECROW
5b3h_D3e-9830365925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084056.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2R6P8W60.0A0A2R6P8W6_ACTCH; Protein SCARECROW like
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-101RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]