PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn353121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 490aa MW: 51686.8 Da PI: 8.3886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn353121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Achn353121 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	14.7	9.1e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H++++ Achn353121 143 WKCEKCSKKYAVQSDWKAHLKVC 165 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.54E-5	66	89	No hit	No description
SMART	SM00355	0.017	67	89	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.8E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.7E-4	131	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.54E-5	138	163	No hit	No description
SMART	SM00355	79	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MRYLADMDEH FEKENSSTAS GEASISSSGN QIVPPPAKKK RNLPGMPDPD SEVIALSPKS 60 LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LSWKLRKRSS KEVRKRVYVC PEPSCVHHDP 120 SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HLKVCGTKEY KCDCGTLFSR 180 RDSFITHRAF CDALAKESVK AQTVVASPPS SPPPSLLPAL SPAGDMLSSV FPIQSADLSE 240 NPNPNPNPNP NPNLIIDDVP VTTGLTGSCS NTSSIGSTSS SVFASLFAST TAPLSLQPQM 300 PGFTSLIRAM APPECAPDLT LPSLSAEPIS LCLATNHGSS IFGTAGQERR QYAPPPQPAM 360 SATALLQKAA QMGAAATNAS LLRGFGIVSS TSSASEWDRR QIEPESGSLV AELGLGIPCD 420 GGSGLKELMM GTPSVFGPEQ TTLDLLGLGM AVGGGPNNGL SALITSIGGG LDVATAAASL 480 TGKDMGRSS*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MRYLADMDEH FEKENSSTAS GEASISSSGN QIVPPPAKKK RNLPGMPDPD SEVIALSPKS  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LSWKLRKRSS KEVRKRVYVC PEPSCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HLKVCGTKEY KCDCGTLFSR  180
RDSFITHRAF CDALAKESVK AQTVVASPPS SPPPSLLPAL SPAGDMLSSV FPIQSADLSE  240
NPNPNPNPNP NPNLIIDDVP VTTGLTGSCS NTSSIGSTSS SVFASLFAST TAPLSLQPQM  300
PGFTSLIRAM APPECAPDLT LPSLSAEPIS LCLATNHGSS IFGTAGQERR QYAPPPQPAM  360
SATALLQKAA QMGAAATNAS LLRGFGIVSS TSSASEWDRR QIEPESGSLV AELGLGIPCD  420
GGSGLKELMM GTPSVFGPEQ TTLDLLGLGM AVGGGPNNGL SALITSIGGG LDVATAAASL  480
TGKDMGRSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	139	204	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-33	139	204	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028076239.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-173	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2R6R5U9	0.0	A0A2R6R5U9_ACTCH; Protein indeterminate-domain like
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-134	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]