PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn352721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 292aa    MW: 32856.9 Da    PI: 6.2362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn352721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.12.3e-42151593129
         NAM   3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.................kvkaeekewyfFskrdkkyatgkrknratks 80 
                  GfrFhP+deelv++yL kk++++k    +     ++e+d++++   d +                   +k +++ewyfFs rd+kyatg r+nrat+s
  Achn352721  15 SGFRFHPSDEELVCHYLYKKTANEKvlkgT----DLEEIDLHTLVGVDRKVtsdirpqlviakesgdvVAKLNSNEWYFFSFRDRKYATGYRANRATTS 109
                 7*********************99965441....24444433333322221223333344445677654444788************************ PP

         NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 gyWkatgkd+++++  +++  g++ktLvfy++rap+g ktdW+mhe+rle
  Achn352721 110 GYWKATGKDRTIHDPrTHAIAGMRKTLVFYQNRAPNGIKTDWIMHEFRLE 159
                 **************9556669**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.41413177IPR003441NAC domain
SuperFamilySSF1019413.4E-4714177IPR003441NAC domain
PfamPF023658.1E-2615158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGTNTSCGTT TKVVSGFRFH PSDEELVCHY LYKKTANEKV LKGTDLEEID LHTLVGVDRK  60
VTSDIRPQLV IAKESGDVVA KLNSNEWYFF SFRDRKYATG YRANRATTSG YWKATGKDRT  120
IHDPRTHAIA GMRKTLVFYQ NRAPNGIKTD WIMHEFRLEN PLLPPKEDWV LCRVFHKSKG  180
SENSPQNIFD STTYLATSPP INHTMITSFS QTPPHQNPND TFQNLSPLNP NLLQLSQEII  240
NDASISGINS KCADEYGFLF DLGFDESSLG DGMPQNLGEM ICDDDNSFVF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-351618318174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111304.11e-121NAC domain-containing protein 21/22-like
TrEMBLA0A2R6QSD30.0A0A2R6QSD3_ACTCH; NAC domain-containing protein
STRINGEOX944241e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-71NAC domain containing protein 74