PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn352361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 24483.4 Da PI: 5.0706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 89 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ + +g Achn352361 89 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEEAAMAYDQAAFSVRG 139 69*******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.32E-29 | 88 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 89 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 89 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 89 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 89 | 149 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.5E-37 | 89 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:1.10.20.10 | 6.3E-4 | 136 | 210 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MNSHFTQYPY LDHSPESSLG SPQSFSWDDL LFDHNSLPFD VNDSEEMLLL GVLAEGASKE 60 SSETVSSGWI KEEEVTSVAK DQKPVKEKSY RGVRRRPWGK FAAEIRDSTR NGIRVWLGTF 120 DSAEEAAMAY DQAAFSVRGS MAVLNFPVER VKESLREMRY GCEEGCSPVM ALKRRHSMRE 180 RSSSKRNKVN KEVKVENVMV LEDLGAEYLE ELLNSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 85 | 148 | 1 | 64 | ATERF1 |
3gcc_A | 3e-28 | 85 | 148 | 1 | 64 | ATERF1 |
5wx9_A | 4e-28 | 90 | 149 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ869861 | 0.0 | GQ869861.1 Actinidia deliciosa ethylene response factor 10 (ERF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234033.1 | 8e-95 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 6e-77 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2R6QSC4 | 1e-156 | A0A2R6QSC4_ACTCH; Ethylene-responsive transcription factor 1B like | ||||
STRING | XP_010262305.1 | 5e-92 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-55 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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