PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn350681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 488aa MW: 54011.1 Da PI: 10.0141

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn350681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5e-31	90	148	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+++fprsYYrCt +gC+vkk+v+r ++d+ +v++tYeg H h+ Achn350681 90 LDDGYRWRKYGQKVVKNNKFPRSYYRCTRQGCHVKKQVQRLSKDEGTVVTTYEGMHSHP 148 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-32	75	148	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	82	149	IPR003657	WRKY domain
PROSITE profile	PS50811	30.412	85	150	IPR003657	WRKY domain
SMART	SM00774	4.0E-36	90	149	IPR003657	WRKY domain
Pfam	PF03106	9.4E-25	91	148	IPR003657	WRKY domain
Pfam	PF07889	4.8E-45	273	384	IPR012458	Protein of unknown function DUF1664

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MTIIEKKMTI IEYRSTFTLT PSQFQGDDRQ NGFFGLVTNS ELVNHVAHES KGFVNGTETS 60 EVNKLGNRKG EKKVRKPKYA FQTRSQVDIL DDGYRWRKYG QKVVKNNKFP RSYYRCTRQG 120 CHVKKQVQRL SKDEGTVVTT YEGMHSHPIE NPATRSQQEA HPYLACSKPG YDSSPSLPKL 180 YGLGLGLVLR CPKPTRSPSR TPSRAQSSPE KPEPKARPKL IFYKQIRPDN SVPSSAKPRN 240 DSLLAQVNSL REELQLLASN RSITIVTSSG SGSRRYGVVV IVIVVGYGYI WWKGWKLPDM 300 MFATRRGLSD ACNTVAKQLE NVYSSVAATK KHLSSRIDRV DCSLDECAEL TAATREEVSE 360 LRGEMKGVGV DVQSVHHAVR TLDAPSSSSR PALEMAHTTP LSRIGSLPPL PSDELPSPST 420 SYGSQKELHE ISEVVNTLTS PDISNCVHAT TQDTTNGNSG YGLFGRNLSG FSASFLTRTR 480 SAMQSFK*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MTIIEKKMTI IEYRSTFTLT PSQFQGDDRQ NGFFGLVTNS ELVNHVAHES KGFVNGTETS  60
EVNKLGNRKG EKKVRKPKYA FQTRSQVDIL DDGYRWRKYG QKVVKNNKFP RSYYRCTRQG  120
CHVKKQVQRL SKDEGTVVTT YEGMHSHPIE NPATRSQQEA HPYLACSKPG YDSSPSLPKL  180
YGLGLGLVLR CPKPTRSPSR TPSRAQSSPE KPEPKARPKL IFYKQIRPDN SVPSSAKPRN  240
DSLLAQVNSL REELQLLASN RSITIVTSSG SGSRRYGVVV IVIVVGYGYI WWKGWKLPDM  300
MFATRRGLSD ACNTVAKQLE NVYSSVAATK KHLSSRIDRV DCSLDECAEL TAATREEVSE  360
LRGEMKGVGV DVQSVHHAVR TLDAPSSSSR PALEMAHTTP LSRIGSLPPL PSDELPSPST  420
SYGSQKELHE ISEVVNTLTS PDISNCVHAT TQDTTNGNSG YGLFGRNLSG FSASFLTRTR  480
SAMQSFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-26	80	149	7	76	Probable WRKY transcription factor 4
2lex_A	7e-26	80	149	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028124929.1	1e-104	uncharacterized protein LOC114321897
TrEMBL	A0A2R6P389	1e-151	A0A2R6P389_ACTCH; Cytospin-B like
STRING	XP_009761400.1	4e-99	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-40	WRKY DNA-binding protein 75