PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 794aa    MW: 88809.7 Da    PI: 6.9083
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.9e-23137238199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  Achn348711 137 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGIEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 232
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  Achn348711 233 VGVRRA 238
                 ***996 PP
2Auxin_resp114.11.3e-37263345183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha +t+++F+v+Y+Pr+s+ eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp rW++SkWr+Lk
  Achn348711 263 AWHAYTTGTIFTVYYKPRTSPVEFIVPFDQYMESVKSNYSIGMRFKMRFEGEEAPEQRFTGTIVGIDDADPKRWTESKWRCLK 345
                 79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-41133252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-40133266IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-21135237No hitNo description
PfamPF023625.3E-21137238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758137239IPR003340B3 DNA binding domain
SMARTSM010196.1E-23137239IPR003340B3 DNA binding domain
PfamPF065077.5E-35263345IPR010525Auxin response factor
PROSITE profilePS5174524.974667760IPR000270PB1 domain
SuperFamilySSF542773.38E-12669746No hitNo description
PfamPF023091.5E-7712752IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MASSECSFKG NAMGESFSSV SGAGKVDAET ALYTELWRAC AGPLVTVPRE GERVFYFPQG  60
HIEQVEASTN QVSDQEMPVY NLPSKVLCRV INVQLKAEPD TDEVFAQVTL HPLKEDGNEV  120
EKEPARSPPP RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK  180
DLHGIEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR  240
QQGNVPSSVI SSHSMHLGVL ATAWHAYTTG TIFTVYYKPR TSPVEFIVPF DQYMESVKSN  300
YSIGMRFKMR FEGEEAPEQR FTGTIVGIDD ADPKRWTESK WRCLKVRWDE TSTIPRPERV  360
SPWKIEPVLT PPALNPLPVP RSKRHRSNMV PSSPDSSVLT REGSYKVTMD PLPASGYSRV  420
LQGHEFSTLR GPFAESNESD SSEKPVVWPP TSEDEKTDVV SVSQRYAPLA RPESTFSNLF  480
LASNWSVMPS GLALNLLNSN RKDPVHGSDV PYQARDNRYY GGFNEYSLLS GQKAEQQQGN  540
WSRPPPLRSY LQTSPHSRDL ASQPALVEQH EAAKGNCKIF GIQLASNPVA AESALSHKNT  600
TLPAGHSNLV PHSQQSRAFK TDQRSEQRES IKVSDHTLPN SEQENPSPTS QPPIRDRQGK  660
VQGGSTRSCT KVHKQGIALG RSVDLTKFNG YEELIDELEQ LFEFNGELKA QNKNWLIVYT  720
DEEGDMMLVG DDPWKEFCGI VRKISIYTRE EVQRMNPVTV TLKCEENSLV GEGTDDKEVK  780
NSTLPLVSNP EKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1753136818355Auxin response factor 1
4ldw_A1e-1753136818355Auxin response factor 1
4ldw_B1e-1753136818355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073186.10.0auxin response factor 2B-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A2R6PSJ90.0A0A2R6PSJ9_ACTCH; Auxin response factor
STRINGVIT_17s0000g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]