PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn347951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21577.4 Da PI: 10.0911 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 36 | 60 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 ++W++Ia +++ gRt++++k++w+++ Achn347951 36 KRWSLIAGRLP-GRTDNEIKNYWNTH 60 38*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 1.2E-7 | 23 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 34 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-7 | 35 | 61 | No hit | No description |
SuperFamily | SSF46689 | 1.64E-8 | 35 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.458 | 37 | 61 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MYGRLGYGNN ITSRARLQGF NIKGVANFRT TTVRKKRWSL IAGRLPGRTD NEIKNYWNTH 60 IRRKLLNRGI DPSTHLAINE PPTVATTISF STPKEEEKFT DGFNTKDEKT PVRERCPDLN 120 LELRISPPYQ HQHQHQHEPL RTGNSLCFSC SLGVESSKGC GCSANGTGSS KAGYDFLGMK 180 SGVLDYRSLE MK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028099008.1 | 3e-71 | myb-related protein 308-like | ||||
Refseq | XP_028113336.1 | 3e-71 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-47 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2R6RHM9 | 1e-111 | A0A2R6RHM9_ACTCH; Myb-related protein | ||||
STRING | EOX97694 | 5e-64 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-37 | myb domain protein 7 |
Publications ? help Back to Top | |||
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