PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn347371

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 427aa MW: 48429.6 Da PI: 7.9719

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn347371	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+++ +++yps+e + + A+++gLte+qV+ WF+ rR k+k+ Achn347371 20 KKRRLKTPSQVEALEKFYFEHKYPSEELKSQFAESVGLTEKQVSGWFCHRRLKDKR 75 7999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-18	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-16	14	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.406	16	76	IPR001356	Homeobox domain
SMART	SM00389	3.5E-15	18	80	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-15	20	75	IPR001356	Homeobox domain
CDD	cd00086	1.12E-15	20	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MLESCEVHSE DSKALPAKYK KRRLKTPSQV EALEKFYFEH KYPSEELKSQ FAESVGLTEK 60 QVSGWFCHRR LKDKRSLYVE VSANGRQDRS SGIIQDRGSG LKQDSCGSTK QGNNRHDPRE 120 VESRRFSGRD FSVANLAYDH DRHHNRNYND MDDTSSGSSL LLQRNFLRQS ENHFDVVTSR 180 YLPKNENIEQ INLMGIRTRI GPSGYLKVKG KVENAAVTAV KRQLGRHYRE DGPQLGVEFD 240 SLPPGAFESS TREPDNEPHF LGDASPLYST DVPGIHNKSN SCTRYEAYNS KMSLHNSDLD 300 GTSFKIMHGS DHHENSMGHR SKPMRLLPNH GNPFPGWKSS LDRNEISTGE ISVYDGSRLY 360 KMRAKHDVEG GSRMDYVSSC HMPPHDRKVT GKHREPWLCK SDDVSLADAQ IEHLEAENSN 420 KTLEYG*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MLESCEVHSE DSKALPAKYK KRRLKTPSQV EALEKFYFEH KYPSEELKSQ FAESVGLTEK  60
QVSGWFCHRR LKDKRSLYVE VSANGRQDRS SGIIQDRGSG LKQDSCGSTK QGNNRHDPRE  120
VESRRFSGRD FSVANLAYDH DRHHNRNYND MDDTSSGSSL LLQRNFLRQS ENHFDVVTSR  180
YLPKNENIEQ INLMGIRTRI GPSGYLKVKG KVENAAVTAV KRQLGRHYRE DGPQLGVEFD  240
SLPPGAFESS TREPDNEPHF LGDASPLYST DVPGIHNKSN SCTRYEAYNS KMSLHNSDLD  300
GTSFKIMHGS DHHENSMGHR SKPMRLLPNH GNPFPGWKSS LDRNEISTGE ISVYDGSRLY  360
KMRAKHDVEG GSRMDYVSSC HMPPHDRKVT GKHREPWLCK SDDVSLADAQ IEHLEAENSN  420
KTLEYG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074602.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	A0A2R6PQW6	0.0	A0A2R6PQW6_ACTCH; Homeobox-DDT domain protein
STRING	VIT_06s0009g03530.t01	1e-133	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-74	HB-other family protein