PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn346721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 265aa    MW: 29297.8 Da    PI: 5.353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn346721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-132379146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     +g W++eEd++l  +  + G g            +W+ Ia++++ gRt++++k++w++
       Achn346721 23 KGLWSPEEDDKLMSYMLRNGQGcwsdvarnaglqRWSQIAARLP-GRTDNEIKNFWNS 79
                     678*****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2791885IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-92055IPR009057Homeodomain-like
SuperFamilySSF466896.58E-132191IPR009057Homeodomain-like
SMARTSM007176.5E-102283IPR001005SANT/Myb domain
PfamPF002493.2E-122379IPR001005SANT/Myb domain
CDDcd001675.72E-92678No hitNo description
Gene3DG3DSA:1.10.10.606.0E-125682IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRKPESSGKN NNNNMNNMSK MRKGLWSPEE DDKLMSYMLR NGQGCWSDVA RNAGLQRWSQ  60
IAARLPGRTD NEIKNFWNST IKKRLKKSSI STPSPNASDS SSDLIRGLMY MDSSSSSLAL  120
NHVIDPLMPV FGSGLTVSSA HNVPTIFMPL IGMDGDGFYG SSHGIFGGDI NLGIDKDLFA  180
PPLENLSMEN NAKTENLINR SSNHTNFLNN TGSVINHCNN SCKIENIEGF ETCWQGEDLK  240
VGEWDLESLM RDVSSFPFID FQGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068093.19e-94transcription factor MYB46-like
TrEMBLA0A2R6PQP01e-176A0A2R6PQP0_ACTCH; Transcription factor like
STRINGXP_010045019.11e-70(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-38myb domain protein 83