PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn345781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 363aa    MW: 40624 Da    PI: 6.5022
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn345781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.6e-062973242855
                 HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                 +++  LA+++gL+++q+ +WF N+R ++
  Achn345781 297 SQKLALAESTGLDQKQINNWFINQRKRH 324
                 67789********************885 PP
2ELK41.13.7e-14232253122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  Achn345781 232 ELKGQLLRKYSGYLGSLKQEFM 253
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.9E-1999143IPR005540KNOX1
PfamPF037902.0E-21101139IPR005540KNOX1
SMARTSM012562.7E-27146197IPR005541KNOX2
PfamPF037911.7E-21150196IPR005541KNOX2
PROSITE profilePS5121311.174232252IPR005539ELK domain
PfamPF037896.0E-11232253IPR005539ELK domain
SMARTSM011882.8E-8232253IPR005539ELK domain
PROSITE profilePS500719.831252327IPR001356Homeobox domain
SuperFamilySSF466891.11E-10254341IPR009057Homeodomain-like
SMARTSM003891.7E-5254331IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-18257329IPR009057Homeodomain-like
PfamPF059204.4E-9296323IPR008422Homeobox KN domain
CDDcd000861.87E-7296328No hitNo description
PROSITE patternPS000270302325IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGGGSSGMM MGGCYVGDNS SSSSGLCPMM MDINHNHDDN NNNTLFLPLP PNNHQNRHNT  60
CSSLMLLDHN LTTNANANAN ANAAGCYFMD NNNEDHSSSS VKAKIMVHPH YHRLLAAYVN  120
CQKIGAPPEV VARLEEACSS AAGVWRSGCV GDDPALDQFM EAYCEMLTKY EQELSKPFKE  180
AMVFLSRIEC QFKALTVASS DSACVGLDRN GSSEEEADVN NNFIDPQAED RELKGQLLRK  240
YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DCFKLNLRVL NPSKLIFRLN LMWQQESQKL  300
ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAH PHYFMDNVLG NPFPMDLSPT  360
LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247256LKQEFMKKRK
2253257KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4586872e-38AM458687.2 Vitis vinifera contig VV78X207550.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026185.21e-161PREDICTED: homeobox protein SBH1
SwissprotP466081e-132HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2R6QLV80.0A0A2R6QLV8_ACTCH; Homeobox protein like
STRINGEOY288071e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-125KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]