PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn345431

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 267aa MW: 29280.2 Da PI: 9.7394

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn345431	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.7e-39	29	88	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ +kcprCds ntkfCyynnysl+qPryfCkaCrryWt+GG+lrnvPvGgg+rk k++ Achn345431 29 QQQPQKCPRCDSLNTKFCYYNNYSLTQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRT 88 57899***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	29	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-33	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEQGRREEGN QNRRLKPPAV QPENQLHHQQ QPQKCPRCDS LNTKFCYYNN YSLTQPRYFC 60 KACRRYWTQG GTLRNVPVGG GCRKGKRTKL ASSSSSSAGE SSEKTNLSPQ PSREPHVPQP 120 GNILTTNSGN LGVPPLDSYY SGGGFLSSLA AIQSLNQTPP FNQQLSGSTQ FGGSSNLGFL 180 QGLNVPSFGQ NQQIQQQSEF YQMGNRDQNF VHPNRPLIGS WNQTLMNTSS TTTNPTSSNP 240 SFISNTPGTS LNPNQWPDLQ GYGHPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016698133.1	5e-75	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698134.1	5e-75	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698136.1	5e-75	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698137.1	5e-75	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_017603994.1	6e-75	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_017603995.1	6e-75	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_017603996.1	6e-75	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A2R6PYH0	1e-159	A0A2R6PYH0_ACTCH; Dof zinc finger protein like
STRING	Gorai.009G168400.1	5e-72	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-33	TARGET OF MONOPTEROS 6